Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01067 ATGGGAAGTAATAGCACTGAAAAGATTCCAATCAATACCAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCCCTGAAAGAACAGATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCCTAATTTGCCAAGGAAAAGTTCTGAAGGATGATCAGCTCCTGTCTGCGTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGCGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTGACAGGCCTCAGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGAGATGGAGTTGCACCTGAAATCAATAGGATCGTTTCTGCAGTTCTAGGATCCATTGGACTTCAAAATTTTGCGAGTGGTGAAGGGATTGACGTCAGGGAGCATGATTCCCAAGGCTCTGGGAGAATTTCAGGCTCTAGTGGGATATTTGATTCATCTCATCCTCAACCCGAACAATCGGGTTTTCGGGTTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGCGACAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCAATGAATTTGATGCAATTGTGAGAGAAGGGGGGAATATTGCCCAAGCAGACGAGGCTCAAAGGAATGTAGAAACTAGACCTGTTTCTTCACGTTCGGGTTCAGTTCTAGAAGGGTTTTCATCTCCGACATTGTTGGCAGAGGTTCTGCTTTCTACCAGACGAATGATTGTTGAACAAGCAGGCGAATGCCTACTTCAAATATCAAGGCAGATGGAGAATCAAGCGGATGTAACTGATCCATTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGGACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTCGAGCTTGGTCGCACAACGATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGAGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTTCCTGTTGGAGCTGCACAGTCTAGCTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGATATACAGATACGACGAGGTACCTCAGCAACATCATCCAATACCACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCAGGCAACCTCCAGGCGTCCAGATGCTTCTTTTTCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCAGCAGTACCGGGTCCTGTGGTCCGTCCGCCTTCAGAATCATCTGGTAATTCCCTAGGTCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAGCATCATGCTGCAGTGCCATCAACTACTGATTCCATGTTGGAAAGGCAAAGCACAGATGATTCTACAAGGAATGTAGGATCCTTATCAACTCAAAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTGGCTGCCAGTGGACCCCAAAACAACCAAGAACCTGAGCGACAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAATAACTCCAGGTTCTGACTCAGATCATGCTGCAACATCAAGGGGGGCTGCCCAAGTCCCCGAAGCACAACCTAATGCCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCAGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGCTTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACCGAGTGATTCTGACTCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAGTGA 2166 0.4492 MGSNSTEKIPINTSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPPPGSLPNHSVTEPNSSSSLTGLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGSGRISGSSGIFDSSHPQPEQSGFRVLSDRSRNAFGAPATVSLGSLQPPVIPDSLTTLSQYLSHISNEFDAIVREGGNIAQADEAQRNVETRPVSSRSGSVLEGFSSPTLLAEVLLSTRRMIVEQAGECLLQISRQMENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSSSSLGSGLGSSFFPRRIDIQIRRGTSATSSNTTNQEERNDTQPASVQRNPGENPVNQATSRRPDASFSGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSLGLYYPILGRFQHVSSGHVNSEQRSQHSSQHHAAVPSTTDSMLERQSTDDSTRNVGSLSTQSTRPEPSNSRVVNINILAASGPQNNQEPERQIPSSVLQLLRSLFPGGEIHVEDSSVQGITPGSDSDHAATSRGAAQVPEAQPNASEEGIFLSNMLREIMPVISQQVGSEGNPSEDHMAQASSTQVETDVGTSRRPSDSDSSPPNPKRQKME 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01067 721 MobiDBLite consensus disorder prediction 430 480 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 674 713 - -
Vian1g01067 721 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 721 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 430 472 - -
Vian1g01067 721 FunFam Large proline-rich protein BAG6 14 107 - -
Vian1g01067 721 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Vian1g01067 721 SMART ubq_7 22 93 IPR000626 GO:0005515
Vian1g01067 721 SUPERFAMILY Ubiquitin-like 17 101 IPR029071 -
Vian1g01067 721 Gene3D - 14 105 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 92 121 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 672 721 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 526 579 - -
Vian1g01067 721 PRINTS Ubiquitin signature 53 73 IPR019956 -
Vian1g01067 721 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vian1g01067 721 PRINTS Ubiquitin signature 74 95 IPR019956 -
Vian1g01067 721 MobiDBLite consensus disorder prediction 179 202 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 626 640 - -
Vian1g01067 721 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Vian1g01067 721 MobiDBLite consensus disorder prediction 106 121 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 171 202 - -
Vian1g01067 721 MobiDBLite consensus disorder prediction 623 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01067 Vian-Chr1 11402289 11415324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01067 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.67e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01067 K23390 - gmx:100783070 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01067 1 11402289 11415324 Vian1g01067 1 11402289 11415324 ECH