Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01054 ATGGGAGATAGCAGTCCCAAAACATATGATAATGATACTATGGTGTTCATTTCCATGTCTCAAGAATTTAAGAATGAGGGAAACAAGCTGTTCCAGAAGAGGGATGTTGAAGGAGCAATACTAAAATATGAGAAAGCCCTGAAGTTACTTCCGAGAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGCTATATGCAAATGGGAGTCAGTGAGTTCCCAAGGGCTATTCATGAATGTGATTTGGCTCTGGAAGTGACACCCAAATATAGTAAAGCACTGTTGAAGAGAGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTAGCTCTAAGAGATGTCAGCACTGTTCTAAAGAAGGAACCAAATAATGTCATGGCATTAGAGATCTCAGAAAAGGTGAAAAATGCACTTGAGGAGAAAGGATCAAGAGTTAACGATACAATAATTGAGTTGCCTCCAAATTATGTCGAACTTCCTAGTGCTTTGACTCCAGAAAAGGTAGTGAAAGAGAATATGCGCAAGAAGAAGGGCTATAAAGAGGAAAAGAAGGCTCCTAATGACAAAATTCTAGAAAGGAAAACCGAGGAGAAGAAGACTGAGGGCTGCATTGTGGTTGTTGAGAAGAAGATCAACACATCGAAGAAGAAGAAGGCCAAGGAAAAAAATGATGAGAAGAAGGCTGATATAAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGGAACATGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCTATCAAATGTAGCCTCTTCCAGTTAAGAGAAGTTATTCAAGATCGATTTTCGAGCCTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGATGAATTAAGAAGGGCCGAAATAGGATCTCATAGTTGTATCAGACTGTACATCGTAGAAGCCACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGGGGAAGTTGTTGGCCTTAACATTGCAGTTGAGAATGGCTGTGTGGGAAAAGCAAATGGAATTGCTAGCTCTTCTTGCATTGAGGAGTGGATAATTCAGTTTGCCAAATTGTTCAAGAACCATGTTGGTTTTGAGTGTGACAGATATTTGGATTTTCACGAACATGGTATGAAGCTCTATTCCGAGGCTATGGAGGAGACGGTTACAGGCGAAGAAGCACAAGGCCTATTTGACATGGCTAGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTTCATATGTCTAAGGCAAGGAAAAAGATATATAAAACAGAAGACTCTTCTAAAGAGCATCTATGCGAACTGATCAAGAGTTCATATGAATGGGCGCTGGAAGAGTATTCAAAGGCAGAAGAAAAATATGATGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGATTTTTGGCTCTGGGGCTGCAGAAGTTTGAGCAAGCAAAACTTTTGTGGTATTATGCACTCAATAGTAATGTAGACTCATTAACATGGCCTTCCGCTGAGGTTCTCCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCTGAAAAGCAGAACTTGAGTAAAATGTCTGATTCAAATTATTCTATATTCGATTTGCAGAACATGGGGTCTGATGGGGTTTTTAAAAGTATGCCCTCAGAAGAACTTGCAGCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATTCTGTACGAACGCTCAATTGTGGAGTTCAAATCAGGGCTACCTATGTGGCATGAAACTCTTGCGGCTTCAGTTGAGAAATTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTAGAGGCATGGAAGGAGATGTACAAAGCTAAAATGTGGAAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTCAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2115 0.3972 MGDSSPKTYDNDTMVFISMSQEFKNEGNKLFQKRDVEGAILKYEKALKLLPRNHIDVSYLRSNMAACYMQMGVSEFPRAIHECDLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVLKKEPNNVMALEISEKVKNALEEKGSRVNDTIIELPPNYVELPSALTPEKVVKENMRKKKGYKEEKKAPNDKILERKTEEKKTEGCIVVVEKKINTSKKKKAKEKNDEKKADIKEVIEERSNGRREHVPNKTVKLIFGDDIRCAELPIKCSLFQLREVIQDRFSSLGAVLVKYRDQEGDLVTITSDDELRRAEIGSHSCIRLYIVEATPEQDPLFEKFKVKEGEVVGLNIAVENGCVGKANGIASSSCIEEWIIQFAKLFKNHVGFECDRYLDFHEHGMKLYSEAMEETVTGEEAQGLFDMARDKFQEMTALALFNWGNVHMSKARKKIYKTEDSSKEHLCELIKSSYEWALEEYSKAEEKYDAAIKIKSDFYEGFLALGLQKFEQAKLLWYYALNSNVDSLTWPSAEVLHLYNNAEENMEKGMQIWEESEKQNLSKMSDSNYSIFDLQNMGSDGVFKSMPSEELAAQEAHMRSQINLLWGTILYERSIVEFKSGLPMWHETLAASVEKFELAGASPTDIAVILKNHCSNNTAVDGLAFKIDEIVEAWKEMYKAKMWKSGVPSFRLEPLFRRRVSKTYHAFELA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01054 704 ProSiteProfiles PB1 domain profile. 250 327 IPR000270 GO:0005515
Vian1g01054 704 Pfam PB1 domain 252 325 IPR000270 GO:0005515
Vian1g01054 704 CDD PB1 252 324 - -
Vian1g01054 704 ProSiteProfiles TPR repeat profile. 20 53 IPR019734 GO:0005515
Vian1g01054 704 SUPERFAMILY TPR-like 21 133 IPR011990 GO:0005515
Vian1g01054 704 Coils Coil 219 239 - -
Vian1g01054 704 ProSiteProfiles TPR repeat profile. 94 127 IPR019734 GO:0005515
Vian1g01054 704 SMART PB1_new 250 327 IPR000270 GO:0005515
Vian1g01054 704 PANTHER PROTEIN CLMP1 4 702 IPR044517 -
Vian1g01054 704 SUPERFAMILY CAD & PB1 domains 249 334 - -
Vian1g01054 704 Gene3D Tetratricopeptide repeat domain 18 148 IPR011990 GO:0005515
Vian1g01054 704 Gene3D - 250 330 - -
Vian1g01054 704 SMART tpr_5 58 93 IPR019734 GO:0005515
Vian1g01054 704 SMART tpr_5 20 53 IPR019734 GO:0005515
Vian1g01054 704 SMART tpr_5 459 492 IPR019734 GO:0005515
Vian1g01054 704 SMART tpr_5 94 127 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01054 Vian-Chr1 11244839 11247057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01054 3 127 Calmodulin-binding Proteins AT3G25230 30.216 1.20e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01054 K26538 - gmx:100807387 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01054 1 11244839 11247057 Vian1g01054 1 11244839 11247057 ECH