Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01030 ATGTCAACAAACCACCTCAGGAATGGAGACTCCGAACCTCTCCTTCGTCAAACTCTACTGTCTTCTTCACAGAGATCCATTGTCAACTCCACATCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCGATTGAGAGCCTCGATTATGAGTCAGTTTTTCCTCCTTTTTTTCATCTGGGTGTTGCGCTTTTGCCCAAAGTTCAAATCTTTTCCGTGACCCACCTCTCAAGTCTCGCGCTTTCTGTTTTGGAAGAGCTTGGGATTTCTCGCAGGTTCCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGCTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTGATAGCACCTGCGGCCACAGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGACGCACCTGGAATATTTACTGTGCAAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCAGCATTATTCGGTCAGGGTGGGTCAAAGAGATATGGGCTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACCTGTGGATCAGCTGCTGGAATGGCTGCTGCTTTCCGCGCCCCTGTTGGTGGTGTGTTGTTTGCTCTGGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCGAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTCTTTATTCTTGGTGTTATAGGGGGGTTACTTGGCAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATTTCCATTTGTACATCCTTCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGCCCACCTAATCCAAGTGAACCTTGTCCTACAATCGGCCGGTCTGGTATCTACAAAAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACGAATGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGACGAGTTTGAGTTGACATCAATGCTAATTTTTTTCGTTACATGCTTTTTGTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCGTCATTGGAATGCTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTATGCTGTACTGGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTATTGCTACCCTTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATAGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGAGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATATCCTCACCTGGGGCAACCAGTGGCGCCGTCTTTGATAATTTTGCAGCCAATGATTTTGCAAAGAAGGGTTCGAGCAAAGTTCGTCTAAAAATAGAAGATATAGAGTTGTCGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTTTTTGTGCATTGCTAACTGCGCAGAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCAGAACATATTTTGGGTTTGCATCCCTTTTTGGTCTTGCTTTCTGAGTCAGCATTGGGTTGCCACTTCCTAAGTAATGTTCACACTTCACAATAA 2277 0.426 MSTNHLRNGDSEPLLRQTLLSSSQRSIVNSTSQVAIVGVNVSPIESLDYESVFPPFFHLGVALLPKVQIFSVTHLSSLALSVLEELGISRRFQLAFFIFFVSNLALTLFASLITALIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALFGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISICTSFLLFGLPWFTSCRPCPPNPSEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFELTSMLIFFVTCFLLSIFSYGVVAPAGLFVPVIVTGASYGRVIGMLLGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPELFGIILRDHLLTLLKKKAFISSPGATSGAVFDNFAANDFAKKGSSKVRLKIEDIELSEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSFCALLTAQRSPVVGILTRHDFIPEHILGLHPFLVLLSESALGCHFLSNVHTSQ 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01030 758 Pfam Voltage gated chloride channel 107 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 SUPERFAMILY Clc chloride channel 76 542 IPR014743 -
Vian1g01030 758 Gene3D - 541 729 IPR046342 -
Vian1g01030 758 ProSiteProfiles CBS domain profile. 669 737 IPR000644 -
Vian1g01030 758 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 70 733 - -
Vian1g01030 758 PRINTS Chloride channel signature 471 487 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 PRINTS Chloride channel signature 527 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 PRINTS Chloride channel signature 119 136 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 PRINTS Chloride channel signature 214 233 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 PRINTS Chloride channel signature 489 508 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 PRINTS Chloride channel signature 150 169 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 PRINTS Chloride channel signature 439 459 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian1g01030 758 Gene3D Clc chloride channel 57 540 - -
Vian1g01030 758 SMART cbs_1 672 731 IPR000644 -
Vian1g01030 758 SMART cbs_1 560 613 IPR000644 -
Vian1g01030 758 PRINTS Plant CLC chloride channel signature 249 259 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian1g01030 758 PRINTS Plant CLC chloride channel signature 235 243 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian1g01030 758 PRINTS Plant CLC chloride channel signature 267 274 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian1g01030 758 PRINTS Plant CLC chloride channel signature 391 407 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian1g01030 758 CDD CBS_pair_voltage-gated_CLC_euk_bac 543 729 - -
Vian1g01030 758 SUPERFAMILY CBS-domain pair 543 727 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01030 Vian-Chr1 10985656 10990865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01030 8 736 Ion Channels AT5G33280 68.079 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01030 K05016 - gmx:100817901 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01030 1 10985656 10990865 Vian1g01030 1 10985656 10990865 ECH