Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01029 ATGGCCATTTCTGCGTTATTCTTGGTTGTGCTGCTGCAATTGTCTACAATTTTTGGCTCGGAGGTTGTCCTACAGTCAAAGGAATGTGGCACTGATTGGGTGGCACATTCATATTCTAGTCATGGTCAGGAACTTTTCTACATAAACGGCAATGTAGTGGACAAGGTTGCTTTCTGTGAGGCTCTCCAATCGTATACTGAAAAGGGGTGTGATGTGAAGGACTACTTTGGAAGTGTCAAATGTGTGACGGATGTTTCTTTTGTGGATTTTCCTTTAAAGGCAGGGAGGAAACTTCTTAAAAAGGATTCAAATACCGAATCTAAACCGCAAGGAGAATCTAAGCCTCTCGCAGCCCACGTGGTTGGTATTTCTGCAGGGGGTGCTCTGTTTGCATGTTGTCTAGTTCTTTGTCCTTGTTTCTTTAAGAGAAGGAAAGCAACTTCTCATGCTGTTCTGAGCAAGGACCCCAATTCAATGGATTCCGTGTCCTCCTTTGAAGCCTCCGTTAATGACAAGATTCCGGCCAGTCCACTACGAGTGCCAGCTAGTCCGTCAAGATTCTCAATGTATCCAAAACTCAGTAGACTTCAATCATTGCATCTCGATCTGAACCAAGTTACAAGAGCTACTCATAACTTCTCAGAAACATTGCAAATAGGAGAAGGGGGTTTTGGAACTGTCTACAAGGCCAAGTTGGAAGATGGTCTGGTCGTGGCTGTAAAACGTGCAAAAAAGGAACATTTTGATAGTTTGAGAGCAGAATTCAGCAGTGAAGTTCAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAATGAACGCATTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGCATGCGTGGAAAAACACTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTACATCTGTATGCAGAAAAGCAAATTATCCATCGAGACGTGAAATCATCCAACATTCTGCTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAAGCTAGGGCCTGTAAACACTGATGAGACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTCCCAAGAGTGACGTTTATTCTTTTGGAATTTTGCTTTTAGAAATCGTATCTGGCCGCCGTCCCGTTGAGTTGAAGAAATCTGTTGAAGAGCGTGTTACACTTAGATGGGCCTTCAAGAAGTACAACGAAGGAAGTGTAGTGGAACTGGTGGATCCTTTAATGGAAGAAGCAGTAAACACAGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCATTCGAGCAGATAGACCTGACATGAAATCGGTGAGCGAGCAGTTGTGGGCAATAAGGGCTGATTACCTCAAGAGTGCAAGGAGAACATGA 1500 0.428 MAISALFLVVLLQLSTIFGSEVVLQSKECGTDWVAHSYSSHGQELFYINGNVVDKVAFCEALQSYTEKGCDVKDYFGSVKCVTDVSFVDFPLKAGRKLLKKDSNTESKPQGESKPLAAHVVGISAGGALFACCLVLCPCFFKRRKATSHAVLSKDPNSMDSVSSFEASVNDKIPASPLRVPASPSRFSMYPKLSRLQSLHLDLNQVTRATHNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRAEFSSEVQLLAKIDHRNLVKLLGYIDKGNERILITEFVPNGTLREHLDGMRGKTLDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNTDETHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVSGRRPVELKKSVEERVTLRWAFKKYNEGSVVELVDPLMEEAVNTDVLMKMFDLAFQCAAPIRADRPDMKSVSEQLWAIRADYLKSARRT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01029 499 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
Vian1g01029 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Vian1g01029 499 SMART serkin_6 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01029 499 CDD STKc_IRAK 219 485 - -
Vian1g01029 499 ProSiteProfiles Protein kinase domain profile. 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01029 499 Gene3D Transferase(Phosphotransferase) domain 1 290 498 - -
Vian1g01029 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 290 499 - -
Vian1g01029 499 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
Vian1g01029 499 Pfam Protein tyrosine and serine/threonine kinase 218 485 IPR001245 GO:0004672|GO:0006468
Vian1g01029 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 185 289 - -
Vian1g01029 499 SUPERFAMILY Protein kinase-like (PK-like) 195 488 IPR011009 -
Vian1g01029 499 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 100 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01029 Vian-Chr1 10977048 10985499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01029 198 488 Receptor kinase-like Gene Family AT5G59700 47.260 3.09e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vian1g01029 PK_Tyr_Ser-Thr 2.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01029 - - gmx:100798260 874.004