Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01005 ATGGAGCTTCAACTTGGTCTTGCTCTCTCAACCAATCAATCTCAATCACTTGACCTCAATTCTCATGCCTACGACTCTATCTTCCATCAAAATAATTCCAATAAAAAACGTACCTTCTTTCAACTCTTTGATCATGCACCACAAACTCTCCACACCGACCTTGTACTTCCCACTCTGTCTCTCCTTCCTTTGACGCCAAGCCACCATAAAGATGATCACGATCAACATAGCCAATGCTCTAGCATCACCAAAAAGGATGAAGAGGATGCCGAAGATATTGTGGGTTGGCCACCGGTAAACTATTGGAGAAAGAAACTTCGTGTCGATAACATTGGAGACCGTGACGAGGTTGTAGGAAAAAACAATCACGTGGTATGGGTTGACCGGTGTCACGGCCATGGTTGTTTGACCACGGGAAGATCCAATTCTTCAAAGTCTCTGTATGTGAAGGTGAAGATGGAGGGTGTTGGAATTGCACGGAAGGTTGATCTTGGCATGCACCAATCCTTTAAGACGCTGACGGAAACCTTGATGGACATGTTTGGAACAGGCCATCAAGAATCAAACAGCTATGAATTGGCTTATCAGGATAAAGAAGGTGACTGGCTTCTGGCACAAGATGTACCTTGGAGGCAAGTGTATATCTAA 648 0.4444 MELQLGLALSTNQSQSLDLNSHAYDSIFHQNNSNKKRTFFQLFDHAPQTLHTDLVLPTLSLLPLTPSHHKDDHDQHSQCSSITKKDEEDAEDIVGWPPVNYWRKKLRVDNIGDRDEVVGKNNHVVWVDRCHGHGCLTTGRSNSSKSLYVKVKMEGVGIARKVDLGMHQSFKTLTETLMDMFGTGHQESNSYELAYQDKEGDWLLAQDVPWRQVYI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01005 215 ProSiteProfiles PB1 domain profile. 146 215 IPR000270 GO:0005515
Vian1g01005 215 MobiDBLite consensus disorder prediction 67 90 - -
Vian1g01005 215 Pfam AUX/IAA family 2 211 IPR033389 -
Vian1g01005 215 SUPERFAMILY CAD & PB1 domains 141 211 - -
Vian1g01005 215 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 211 IPR003311 GO:0005634|GO:0006355
Vian1g01005 215 Gene3D - 140 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01005 Vian-Chr1 10626374 10627144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01005 97 212 B3 DNA Binding Superfamily AT3G61830 23.810 6.28e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vian1g01005 AUX_IAA 2.2e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01005 K14484 - gmx:100808466 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01005 1 10626374 10627144 Vian1g01005 1 10626374 10627144 ECH