Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00989 ATGACAACCTGCGGCATCGATGTTGCGCCCGAGCAACTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCCGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTCCACCCCCCACTAATGTAACTGAGGAAAGGGTTGTCAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCCAAAAACTGGGCACATTTTCCCCATATTCACTTCGGGCTGATGCTGGACAGCAACAACCAAGCTAAGATGGAAAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTAATGAATAAATGA 561 0.4866 MTTCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRPPPTNVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLMSRAALMNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00989 186 CDD HMG-box_SF 113 149 - -
Vian1g00989 186 PANTHER PROTEIN YABBY 6-RELATED 9 169 IPR006780 GO:0007275
Vian1g00989 186 FunFam Axial regulator YABBY 104 176 - -
Vian1g00989 186 SUPERFAMILY HMG-box 102 152 IPR036910 -
Vian1g00989 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Vian1g00989 186 Gene3D High mobility group box domain 98 178 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00989 Vian-Chr1 10444282 10447720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00989 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 76.543 2.48e-90 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vian1g00989 YABBY 9.2e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00989 K25796 - gmx:100804731 373.244