Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00986 ATGAATGAACGTCGAAAAAACATGAATGTCAGGAGAAAGATCGGGAAGTATGAGGTGGGGCGAACTATTGGTGAAGGCACGTTCGCCAAGGTCAAGTTCGCCAGAAATTCTGAAACAGGGGAGAGCGTGGCCATTAAAACTATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAGCAGATTAAAAGAGAGATATCGATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCCAGACCAAGATTTACATAATCCTTGAATTTGTGATGGGAGGGGAACTATATGACAAAATTGTTCAGCAGGGAAGGCTTTCTGAAAATGAATCTAGACGCTATTTTCAACAACTTATAGACGCTATTGATCATTGTCATAAAAAGGGTGTGTACCATAGAGACCTGAAGCCTGAAAACCTCCTTCTCGATGCTTTTGGAAATTTGAAAGTTTCTGACTTTGGATTGAGTGCATTGACTGAAAAGGGTGTTGGCCTTCTTCACACCACTTGTGGGACCCCAAATTATGTTGCCCCTGAGGTGATCGGAAATCGAGGATATAATGGTGCTGCAGCTGACGTTTGGTCATGTGGGGTCATCCTATATGTTCTACTAGCCGGATATCTTCCTTTTGAGGAGCCTGACCTTCCAACTTTGTACAGAAGGATCAATGCTGCAGAGTATGTCTGCCCATTCTGGTTTTCTGCTGAGACAAAGTCATTCATACATAAAATTCTAGATCCTAATCCAGAAACAAGGGTGAAAATTGAAGAAATAAGGAAAGTTCCATGGTTCCAGAAAAACTATTTTCCTGTCAAACTCAAGGAATGTGAGCAAGTAAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAATATGTTGCTGAAAAGTCAGAAATTACCGAGGGAGGAGGTCCTTTCATAATGAATGCATTTGAGATGATTTCCTTATCACAAGGATTGAATCTTTCACCATTGTTTGATAGGCACCAGGATTATGTAAAGCGACAAACACGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCTGTTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTAGAAGGTGTTTCTGTAAACAAGGTTGGGCAACTTGCGGTGGTCTTGGAGGTTTTTGAAGTCGCTCCATCCCTTTTCATGGTTGATATTCGGAAGGCAGCTGGGGACACTTTTGACTACCACAAGTTTTACAAGAGTTTTTGTTCCAAACTCGGAAACATTATTTGGAGACCGGCAGGGACCATTCCAAATTCTAACACGCTTAAGCAAATGACTGTATAA 1362 0.4156 MNERRKNMNVRRKIGKYEVGRTIGEGTFAKVKFARNSETGESVAIKTMAKTTILQHRMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQQGRLSENESRRYFQQLIDAIDHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTEKGVGLLHTTCGTPNYVAPEVIGNRGYNGAAADVWSCGVILYVLLAGYLPFEEPDLPTLYRRINAAEYVCPFWFSAETKSFIHKILDPNPETRVKIEEIRKVPWFQKNYFPVKLKECEQVNLDDVRAVFDDIEDQYVAEKSEITEGGGPFIMNAFEMISLSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSVEAVAESMGLKVHSRNYKVRLEGVSVNKVGQLAVVLEVFEVAPSLFMVDIRKAAGDTFDYHKFYKSFCSKLGNIIWRPAGTIPNSNTLKQMTV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00986 453 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00986 453 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Vian1g00986 453 Gene3D Kinase associated domain 1, KA1 313 437 - -
Vian1g00986 453 FunFam Non-specific serine/threonine protein kinase 10 310 - -
Vian1g00986 453 FunFam Non-specific serine/threonine protein kinase 311 437 - -
Vian1g00986 453 Pfam NAF domain 316 373 IPR004041 GO:0007165
Vian1g00986 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vian1g00986 453 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Vian1g00986 453 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Vian1g00986 453 SUPERFAMILY Protein kinase-like (PK-like) 14 297 IPR011009 -
Vian1g00986 453 Gene3D Transferase(Phosphotransferase) domain 1 7 312 - -
Vian1g00986 453 CDD CIPK_C 318 431 - -
Vian1g00986 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 422 - -
Vian1g00986 453 SMART serkin_6 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00986 453 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00986 Vian-Chr1 10395598 10403993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00986 12 379 CBL-interacting serine-threonine protein kinases AT5G35410 72.826 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian1g00986 Pkinase 5.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00986 - - gmx:100811380 815.453