Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00980 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCCGAAATTCGCCACCCGCTTCTTAAGAGAAGGGTGTGGCTGGGGACATTTGAAACGGCAGAAGAAGCTGCTCGAGCCTATGATCAAGCTGCTATTCTTATGAGTGGGAGAAATGCTAAAACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTACCAGTGAGGACACCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGTAAGGTGCCTTCACCTTCTATGACCTGCTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCCGGGAGACGTTCGGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTACCGACAATGAGACTCATCAAGCTGATAGTAGCACTTCTCTTTCTCTACCTTCTTCCGATCACCACCACCACCACCGTGAGTCTCCATCGGGTGTGACAGGTCATCATCAACATGAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATCGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAGCAACTTTCAAGAAAGGGATGGTGGTGATGATGACACCTTTTTTCTTTAA 696 0.4813 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEDTPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSTDNETHQADSSTSLSLPSSDHHHHHRESPSGVTGHHQHEEVVRGEIDEEERIALQMIEELLNDRNCPSPSFSNFQERDGGDDDTFFL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00980 231 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vian1g00980 231 MobiDBLite consensus disorder prediction 142 161 - -
Vian1g00980 231 MobiDBLite consensus disorder prediction 61 82 - -
Vian1g00980 231 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vian1g00980 231 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vian1g00980 231 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vian1g00980 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 166 - -
Vian1g00980 231 MobiDBLite consensus disorder prediction 208 231 - -
Vian1g00980 231 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vian1g00980 231 MobiDBLite consensus disorder prediction 142 191 - -
Vian1g00980 231 MobiDBLite consensus disorder prediction 162 191 - -
Vian1g00980 231 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vian1g00980 231 MobiDBLite consensus disorder prediction 61 86 - -
Vian1g00980 231 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vian1g00980 231 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vian1g00980 231 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00980 Vian-Chr1 10313999 10314808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00980 1 206 AP2-EREBP Transcription Factor Family AT1G15360 61.792 2.61e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian1g00980 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00980 - - gmx:100787517 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00980 1 10313999 10314808 Vian4g01967 4 36314812 36315504 ECH
Vian1g00980 1 10313999 10314808 Vian1g00980 1 10313999 10314808 ECH