Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00972 ATGTTTGATGTTCCTCATTCTGTTCAAATCAAAAACCCTAACACAGGAGAACCAGTGAACCCCAAAGCTTACCCTTTGGCTGATGCCCAGCTCACAATAACCATACTAGATCTTGTTCAGCAAGCTGCAAACTATAAACAGCTCAAAAAAGGTGCAAATGAAGCCACCAAGACTCTTAACAGAGGTATCTCTGAGTTTGTTGTAATGGCTGCTGATACTGAGCCCCTTGAGATTCTTCTCCATCTCCCTCTACTTGCTGAGGACAAGAATGTTCCCTATGTGTTTGTCCCATCAAAACAAGCACTTGGACGTGCCTGTGGGGTCACCAGACCAGTGATTTCTTGTTCTGTTACAACCAATGAAGGAAGTCAATTGAAATCTCAAATCCAGCAACTAAAGGATGCTATTGAGAAGCTTTTGATCTGA 426 0.4272 MFDVPHSVQIKNPNTGEPVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00972 141 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g00972 141 PRINTS High mobility group-like nuclear protein signature 95 107 IPR002415 GO:0003723|GO:0005730
Vian1g00972 141 PRINTS High mobility group-like nuclear protein signature 34 49 IPR002415 GO:0003723|GO:0005730
Vian1g00972 141 PRINTS High mobility group-like nuclear protein signature 21 34 IPR002415 GO:0003723|GO:0005730
Vian1g00972 141 PRINTS High mobility group-like nuclear protein signature 51 61 IPR002415 GO:0003723|GO:0005730
Vian1g00972 141 Gene3D - 13 141 IPR029064 -
Vian1g00972 141 PRINTS Ribosomal protein L7A/RS6 family signature 93 107 IPR018492 -
Vian1g00972 141 PRINTS Ribosomal protein L7A/RS6 family signature 48 62 IPR018492 -
Vian1g00972 141 PRINTS Ribosomal protein L7A/RS6 family signature 67 80 IPR018492 -
Vian1g00972 141 PRINTS Ribosomal protein L7A/RS6 family signature 83 93 IPR018492 -
Vian1g00972 141 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 14 138 - -
Vian1g00972 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 36 124 IPR004038 -
Vian1g00972 141 SUPERFAMILY L30e-like 19 139 IPR029064 -
Vian1g00972 141 CDD SNU13 20 141 - -
Vian1g00972 141 FunFam NHP2-like protein 1 homolog 14 141 - -
Vian1g00972 141 ProSitePatterns Ribosomal protein L7Ae signature. 86 103 IPR004037 GO:0042254|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00972 Vian-Chr1 10217970 10219113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00972 48 137 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 30.000 1.57e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00972 K12845 - tcc:18588745 235.343