Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00969 ATGCCCTGGTCTTATGCTTCCCCCTATGTGCCTCCCCATCACAACTCTAACTACATTCCACCTTCCGATGATCCTGCTCACAACGGATTTTCCCGTGCTTCCGCTCCCCGTCCTGGAGCCTGGCAACGCGGCGGCAGCGCCGGCCGTGGTGCCTCCGGTGGTCGTGGAATCTCTCGGCCCCGTGAGTCTTCTCACCGGAACTCACGTTTCCCCGTGGAGGAACAAGAAAATGGCGACGCTATTAACTTTGACGCGTACGAGTCTGTCCCGGTGGAGGCGAGTGGGAAGGACGTGCCTCCGCCGGTGAACGTCTTCGACGATACGGACTTGGACGAAGGGTTGAAGAGGAATATCAAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCGGGCCGTGACCTTATGGCGTGTGCACAGACTGGGTCGGGGAAAACGGCGGCGTTTTGCTTTCCCATCATATCTGGGATTTTGAAGGGTCGCTCCTCTTCTGCGTTTTCGCCTGTATCTCGTGGTGTCGCTGTTGCGTACCCCACTGCGCTTATTTTGTCTCCTACGAGGGAGTTATCTTGCCAGATACGCGATGAAGCGAACAAATTTGCATTTCAAACTGGAGTGAAGGTTGTTGTTGCCTATGGTGGATCTCCTATCATTCAGCAGCTGCGCCTTTTGGAGAAGGGGGTTGACATATTAGTTGCCACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGGCGAGGATTAAGTACCTTGCATTAGACGAAGCTGATCGTATGCTGGACATGGGTTTCGAGCATCAAATACGCAAGATTGTGGAGAAAATGCACATGCCACCGCCAGGTATCAGACAGACATTGTTGTTCAGTGCAACGTTCCCTAATGATATACAGAAGCTAGCTTCGGACTTTTTGTCGGACTACATATTCTTGTCTGTTGGGAGAGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATACAGACAAAAGAGACAAACTTGTTGCTCATCTTCGTAACCAAAAGGTGCATGGGACCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTAGAAAGCTGGTTATCGAAAAGTGGCTTTCCAGCTATTGCCATACACGGAGACAAAGTTCAATTGGTTAGATATTCTGCCTTCTATTTTATTCTTTGTTGCTTGAGAATTGGACGAACAGGCCGTGCAGGCAAATCTGGTTTAGCCACTGCTTTCTTCAGTGACAAGAACAGTCCAATGGCAAAGGCTCTTGTTGGACTCTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAACCAGTTTGCAGAGTGTTCCTCCTCAGGTGGCCGTGGTCGTGGTTATGGATCACAGCGTTATAGCAGTGGTAGCTATGGCGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTGCAAAGCTACAACTGCTACGGTTCTCATGGCAATGCAGATAATGCGGTAGAATCTTTTAGTACAACTTCATACGTTGATACCTCGTACGACATGCAAAACTACCCTGTAGAAACATCTTTTGACAATTTGAATATAAGTTGCAGTTATGAAGAAGGAGATGTTAACTCTATTGAACTGTGTGGAGGTGTAACGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTCCCACTGGATGGGACTAG 1746 0.4885 MPWSYASPYVPPHHNSNYIPPSDDPAHNGFSRASAPRPGAWQRGGSAGRGASGGRGISRPRESSHRNSRFPVEEQENGDAINFDAYESVPVEASGKDVPPPVNVFDDTDLDEGLKRNIKRCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSSAFSPVSRGVAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGSPIIQQLRLLEKGVDILVATPGRLVDIIERERVSLARIKYLALDEADRMLDMGFEHQIRKIVEKMHMPPPGIRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDTDKRDKLVAHLRNQKVHGTNGKHALTLVFVETKRGADALESWLSKSGFPAIAIHGDKVQLVRYSAFYFILCCLRIGRTGRAGKSGLATAFFSDKNSPMAKALVGLLQEANQEVPSWLNQFAECSSSGGRGRGYGSQRYSSGSYGGRDFRNPTEPEVQSYNCYGSHGNADNAVESFSTTSYVDTSYDMQNYPVETSFDNLNISCSYEEGDVNSIELCGGVTVGEEGPSGYASIVPTGWD 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00969 581 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 417 464 - -
Vian1g00969 581 MobiDBLite consensus disorder prediction 1 79 - -
Vian1g00969 581 Pfam DEAD/DEAH box helicase 127 311 IPR011545 GO:0003676|GO:0005524
Vian1g00969 581 Gene3D - 414 467 IPR027417 -
Vian1g00969 581 Gene3D - 325 409 IPR027417 -
Vian1g00969 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Vian1g00969 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 322 IPR014001 -
Vian1g00969 581 SMART ultradead3 122 337 IPR014001 -
Vian1g00969 581 FunFam Probable ATP-dependent RNA helicase DDX4 66 324 - -
Vian1g00969 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 466 IPR027417 -
Vian1g00969 581 MobiDBLite consensus disorder prediction 59 73 - -
Vian1g00969 581 CDD DEADc_DDX3_DDX4 105 328 IPR044763 GO:0003724|GO:0005524
Vian1g00969 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 324 IPR027417 -
Vian1g00969 581 Gene3D - 58 324 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00969 Vian-Chr1 10192018 10194652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00969 101 433 Eukaryotic Initiation Factors Gene Family AT3G19760 28.150 1.89e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00969 K11594 - gmx:100791226 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00969 1 10192018 10194652 Vian1g00969 1 10192018 10194652 ECH