Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00963 ATGGACGAAGATTCGCTCAAACGCAACACTGATTGCGTTTATTTTTTGGCCTCTCCCCTCACTTGCAAAAAGGGGGCTGAATGTGAGTATCGGCACAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCCAATGCCTGAATCCAACGTGTGCTTTTAGACACCCTCCTCTGGATGGGCACACTGGAGTGCCAGCGCCATCTGAACCTGCACAGATTTCATTGCCTGCAAACAAGACAATGGTTCCGTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCTTTTTTGCATGGGTCTGATGATAGCATTTTTACTGTAAAACCTGTGAAGAATGATAACGGAAGCACCGATGCACGCAATCTAGAAAATAAAACATCATCAGGAAATGGAACTGGTGTAGCGTCAGTGCCAACTCACCAATCTTTAACTATTCCAAAGCATTTGTCTGATTTTAAGCGTCAGCCCAAGGAAAAGTTACAGTTATCCAAAAATGTTAAGCAGCAAGGCGATTCCCTAGTGATATCTGCTTCTGAATACAAAGAAGCTGCAGTAAGTAGGTCAGACTCTCCGTTTCCAGATGACGGCTTTGTACATAATGTATCTCATTTACGCACTGAGCGGAGTTCGGAAGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCACAATGAATTGGAGAACTTGGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGAATGAGCAAGAGCTGAATGAACAGTACTTGGGGTATGAATTTAAGGATCCAGTTGAGTATGATACTATGTGCCCGGAAGCTGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGTGACCTTACTCATGGTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGGAAAAGGATTCGGATGTCAGCTGAGGTGGCTGCCTATGACAATAATTTAGATCTACGTGACCATCTCAGGAGACGTAGAGAAAATAATGGGCCTCCCATTGCAGGTTTCTTAAGAAGACAAGAATCGTCTTCTTTGATGATTCGAAACCAGGAAAGGCACCAGAGGCCTGGCATTGAGCAGCGGCCAAGTAGATTGACATCACAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACAGGTTATTCAGGCGTTCCCAGCAACACAAACCAAGGAAGCATTATAGAGAAAAGCCAGCGAAACGACCATTTCTGTCATCTAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGATTTGTTGAGGAATCTACTGCATTTTCAGGACCTAAGACTCTTGCAGAAATTAGAGAAGAGAAGAAGAAGGCTGAAGAAGGTTTACATTGGAAACGCCCATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTGAAGGACAAAAGGACCATGGATTAG 1557 0.4271 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGQCLNPTCAFRHPPLDGHTGVPAPSEPAQISLPANKTMVPCYFFFNGFCNKGDKCSFLHGSDDSIFTVKPVKNDNGSTDARNLENKTSSGNGTGVASVPTHQSLTIPKHLSDFKRQPKEKLQLSKNVKQQGDSLVISASEYKEAAVSRSDSPFPDDGFVHNVSHLRTERSSEEQVNSQIEPEERWESSPHSPGFDVLVHNELENLGYEEDSEYLPVLDRNEQELNEQYLGYEFKDPVEYDTMCPEADILYPQETYDGYRCFDSDLTHGNGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAYDNNLDLRDHLRRRRENNGPPIAGFLRRQESSSLMIRNQERHQRPGIEQRPSRLTSQLGYSAIDSIGEVETLSIANKHRLFRRSQQHKPRKHYREKPAKRPFLSSKISRKPVFKQRGFVEESTAFSGPKTLAEIREEKKKAEEGLHWKRPSTDFQDPKPLSEILKDKRTMD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00963 518 MobiDBLite consensus disorder prediction 120 150 - -
Vian1g00963 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 108 IPR000571 GO:0046872
Vian1g00963 518 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Vian1g00963 518 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Vian1g00963 518 Gene3D - 2 63 - -
Vian1g00963 518 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 517 - -
Vian1g00963 518 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Vian1g00963 518 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Vian1g00963 518 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vian1g00963 518 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Vian1g00963 518 Pfam Zinc-finger containing family 7 63 IPR041686 -
Vian1g00963 518 MobiDBLite consensus disorder prediction 214 239 - -
Vian1g00963 518 Gene3D - 71 121 - -
Vian1g00963 518 MobiDBLite consensus disorder prediction 214 237 - -
Vian1g00963 518 MobiDBLite consensus disorder prediction 483 518 - -
Vian1g00963 518 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vian1g00963 518 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00963 Vian-Chr1 10143320 10145614 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g00963 zf-CCCH_3 1.5e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00963 - - gmx:100792282 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00963 1 10143320 10145614 Vian1g00963 1 10143320 10145614 ECH