Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00959 ATGAGTTTCTCTGACCACATTCCATCTTTTATGATGTCACCGCCGTCATTTTCGACAGACACAGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGATTTATTGGAGGAACATTCACCGCAGGATCAACCCCCTTTGTTCAAGAGGGCAAGAATTGGTGATAACAATCACTCCTATCCAATGGCATGCCCTCCAAAGATGATTCAGAACCCCAATTTTAATAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAATTCAGAGTTGGGGCTTGTAGGAACGGTGATAATTGCAACTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCCCCGAACTGGCAAGAGCTTGTTGGATTGCGCAATGAGGAGCGGCTACCCTCCGGGAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTGTAATGGGGACGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCTATAAACATCGGAACTAATGGATCTCCCAAGGCATATGGTGATCCTTCAAATTGTTTAGAGAATAATAAGGTTGTCAACACTGGCTTAAATGTTTCCCGCTCGAATGTTAAGTCCACCTATTGGAAAACTAAACTGTGCATCAAATTTGAGACAACAGGGCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGCTACAATTTCCTGGTGGACGCAATGAGGCAGAAACTGCAGGTGCCGCTCTAGTTTCAAATAAAGCTACCATTCCAACCTTACCAAGAGCTACACCAATTCTTTCTAATGATGCTCCTCCAAGCCAGAGAGCAAGTGTGCCTCCTGCAAATGAAGAGGAGCAGGGCAAGAAGCATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGACGATTTACCACTAGGTCACAACTTGCCAGGTAGAGTTGGAATCTGA 1041 0.4534 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNDLLEEHSPQDQPPLFKRARIGDNNHSYPMACPPKMIQNPNFNKGTSHIFFKTRMCAKFRVGACRNGDNCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYCNGDECPYGDKCSFLHEDPAKFRDDSGRYRESTAINIGTNGSPKAYGDPSNCLENNKVVNTGLNVSRSNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQFPGGRNEAETAGAALVSNKATIPTLPRATPILSNDAPPSQRASVPPANEEEQGKKHLLKWKGPKKINRIYGDWLDDLPLGHNLPGRVGI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00959 346 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Vian1g00959 346 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vian1g00959 346 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Vian1g00959 346 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 175 IPR045877 GO:0003729
Vian1g00959 346 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Vian1g00959 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Vian1g00959 346 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vian1g00959 346 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Vian1g00959 346 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vian1g00959 346 MobiDBLite consensus disorder prediction 284 298 - -
Vian1g00959 346 Pfam CCCH-type zinc finger 87 108 IPR041367 -
Vian1g00959 346 Pfam CCCH-type zinc finger 147 168 IPR041367 -
Vian1g00959 346 Gene3D - 219 258 - -
Vian1g00959 346 Gene3D - 143 172 - -
Vian1g00959 346 Gene3D - 77 114 - -
Vian1g00959 346 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Vian1g00959 346 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Vian1g00959 346 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Vian1g00959 346 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vian1g00959 346 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00959 Vian-Chr1 10115832 10117820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00959 228 257 C3H Transcription Factor Family AT1G68200 60.000 6.08e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g00959 zf-CCCH 9.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00959 - - gmx:100793865 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00959 1 10115832 10117820 Vian1g00959 1 10115832 10117820 ECH