Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00946 ATGGAGGACAGAAAAGCCAACACAATCTCTGCGATAGCGGTGATTGCACTTATCATATTTATCATCGTTGCACGCGTCTCCCTGAAGCTTTCACACGCCTTCTTCCTCATATGTGGCGCTTCTATTGCTGTGATCATCGCCGTCTTTTCTTGTGCATTCATAAGGCACCGTTACCACCGCAGGAGGAGGTTGTTGGAATCACAGTTGAAGACGGAAGGGCGAGAGCTTCGAATAGAGTACAGTTTCTTAAGAAAAGTTGCCGGGGTTCCCACGAAGTTTCGTTACAAGGAGCTTGAGGAAGCAACGGATGGGTTTCAATCACTGTTGGGAAGAGGGTCCTCGGCTTCGGTCTTCAAAGGCATTCTCAGCGATGGAACTTCGGTTGCAGTGAAACGGATCGATGGAGAGGAGCGTGGGGAGAAGGAATTCAGATCAGAAGTTGCCGCCATTGCTAGCGTGCACCATGTCAACCTGGTGCGCATGTTTGGTTATTGTAACGCCCCCACATCGCCTAGGTACCTCGTTTATGAGTACATCCCAAACGGGTCTTTGGATTGTTGGATCTTTCCCTCAAGGGAAAAGCGTGCACGTAGAAGTGGGTGTTTGCCATGGAACTCGAGGTATAAGGTTGCGATTGATGTTGCCAGGGGGTTGTCTTATCTTCACCATGATTGTAGGAAGAGGGTTTTGCACCTTGATGTCAAACCCGAGAATATACTCTTGGATGAGGATTATAAGGCTCTTGTTTCAGATTTTGGTCTCTCAACGCTTGTAGGAAACGATGTGAGTCAGGTGATGACAACAATGAGGGGGACAAGAGGGTACTTGGCTCCTGAGTGGCTTTTGGAAAGAGGGGTGTCAGAGAAAACTGATATTTACAGTTATGGGATGGTTTTGTTGGAAATAATTGGAGGGAGAAGGAATGTTCTGAGGGTGGAGGATCCGAGAGACAGCAGTAAGAAAAAGTGGGAGTTTTTTCCAAAGATTGTTAACGAGAAAGTGAGGGAGGGGAAGTTCATGGAGATTGTGGATCATAGGTTGATTGAAAGTGGGGGTGTGGATGAGAGTGAGGTGATTAGATTGGTGTATATTGCATTGTGGTGTATACAAGAGAAGCCAAGATTGAGACCTACAATGGCACAAGTGGTTGATATGCTTGAGCAGCGTGTGAGGGTGGATGAACCCCCTGGTTCCAGAATGATTCTAGTTGATTTACTAGCTGTTGATGAAGATCCTGTAGATCATCGAAATCTTGCAAGGTTGTTGACCTCTGTTTCGAGCAATGTGGATTGTACATCTACTTACTCACTTGGAACAACTATTTTATCTGGCAGATAG 1338 0.4634 MEDRKANTISAIAVIALIIFIIVARVSLKLSHAFFLICGASIAVIIAVFSCAFIRHRYHRRRRLLESQLKTEGRELRIEYSFLRKVAGVPTKFRYKELEEATDGFQSLLGRGSSASVFKGILSDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVRMFGYCNAPTSPRYLVYEYIPNGSLDCWIFPSREKRARRSGCLPWNSRYKVAIDVARGLSYLHHDCRKRVLHLDVKPENILLDEDYKALVSDFGLSTLVGNDVSQVMTTMRGTRGYLAPEWLLERGVSEKTDIYSYGMVLLEIIGGRRNVLRVEDPRDSSKKKWEFFPKIVNEKVREGKFMEIVDHRLIESGGVDESEVIRLVYIALWCIQEKPRLRPTMAQVVDMLEQRVRVDEPPGSRMILVDLLAVDEDPVDHRNLARLLTSVSSNVDCTSTYSLGTTILSGR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00946 445 Pfam Protein kinase domain 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00946 445 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
Vian1g00946 445 PANTHER OS07G0415500 PROTEIN 29 397 - -
Vian1g00946 445 SMART serkin_6 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00946 445 FunFam Putative receptor-like protein kinase 70 178 - -
Vian1g00946 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vian1g00946 445 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Vian1g00946 445 ProSiteProfiles Protein kinase domain profile. 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00946 445 Gene3D Transferase(Phosphotransferase) domain 1 179 395 - -
Vian1g00946 445 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Vian1g00946 445 FunFam Putative receptor-like protein kinase 179 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00946 Vian-Chr1 10008006 10009343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00946 1 398 Receptor kinase-like Gene Family AT5G20050 63.840 2.29e-178 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian1g00946 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00946 - - gmx:100779485 782.711