Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00939 ATGTTGGGCTGCGGCCAAGAAGAGATTGAACTGTCACGGGATGGCAGCCACTACAGTCTCTCCACCGGAATACTTCCGTCTCTCGGGGCCAAAAGCAACCGTAGAATCAAGCTGCGCCGCTTTATTCTATCGCCCTACGGCCGCCGTTACAGGATATGGGAAACTTTCCTTATTATTCTGGTATTTTATACTGCCTGGGTTTCTCCCTTCGAATTCGGATTCTTGAAGAAGCCAGAACCACCGCTTTCCATTTCGGACAATATTGTGAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTTGTGGCTTACATTGACAAAACCACCTATTTGATCGTGGATGATCGGAAACAGATTGCTTGGAAATATGCAAGGACTTGGCTGGCCTTCGATGTTGTCTCCATCATTCCTTCAGAGCTTATACAAAAGTTATCACCTTCTCCTCTTCAATCTTACGGTTTATTCAATATGCTTCGCCTATGGCGTCTTCGGAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCCAAGCTTATTTCTGTTACTCTCTTCGCTGTTCATTGTGCTGGGTGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCAAAAAAGACGTGGATTGGTTCAACGATGGATAATTTCCTTGAACATAGTTTGTGGTCAAGATACGTGATGTCTATTTACTGGTCTATTACTACCTTAACAACTGTCGGTTATGGAGATTTGCATCCAGTGAATTCAAGGGAGATGACCTTTGACATTTTCTATATGCTCTTTAATCTGGGGTTAACAGCGTATTTGATTGGTAATATGACCAACTTGGTTGTCCACGGCACAAGTCGAACCAGAAAATTTAGAGATACCATCCAAGCTGCCTCAAATTTTGCCCAAAGGAATCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCCCACTTGTGTTTGAAGTATAGAACCGACTCGGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAGGCCATCAGATCCAGCATTTCACATTATCTTTTCAATTCTCTGATTGATAAGGTCTACTTGTTTAAGGAGGTTTCGAATGACTTGCTCTTTCAATTGGTATCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAACTGGTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAGATAGGTGTGCTCTGTTATAAGCCACAGCTTTTCACTGTTCGAACGAAGCGACTAAGCCAGTTGCTGAGGCTAAATCGTACTACTTTCCTGAATATTGTTCAGGCCAACGTGGGGGACGGAACCATTATCATGAATAATCTGCTTCAGCATTTGAAAGAGCTCAACGACCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAACATGCTAGCTCGTGGTAGAATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGTGATGACTTGTTGTTACATCAGTTGCTGAAACGAGGAATGGATCCAAACGAATCCGACAACAATCGAAGGACAGCTTTGCATATAGCAGCATCTCAAGGGAAAGAAAACTGTGTTCTGCTTCTGTTAGATTATGGGGCGGACCCCAACATTACAGATTTGGACGGTAATGTGGCACTATGGGAGGCTATGGTGGGAGGACATGAGTCAGTGAGGAAGGTGTTGGCAGAAAATGGAGCTAACTTGCAATGTGGGGATGTGGGCCAGTTTGCATGTACCGCTGTTGAGCAGAACAGTTTGAAGTTGCTGAAGGAAATAAGGCGCTACGGAGGAGATATCACCCTTCCAAGCATCAACAGTGGGACCACAGCCTTGCACGTTGCAGTGTCGGAGGGGAACGTTGAAATTGTGAAATACCTTTTGGATCACGGGGCAAGCATTGACAAGCCGGACAAGCACGGCTGGACCGCCAGAGGTCTGGCAGATCAGCAATCTCATACAGAAATAAAAGCCATTTTTGACTCCACTGGGGACCCTAAGGTTCAGTCTTTCGTTACCATACCCGAGAAGCAGAGTGGGTTCAGGTTCCTTGGAAGGTTTACTAGTGAGCCAACCATGCCTTCACCCCTTGACGGCTCATTTCATGGAACGGATGCCTCTTGGAGCCAGAGCCAGAGCCAGAACCGTCCAAGGCGTAGGAGCAGCAATTATCATAATTCACTCTTAGGGATGATGGCAGCAGCACATAATGGGGAAAAGGACCTGCTTTTGCCTCTTGACATGAATAACAAGGCAAGCAATGTCATGAAGAGTAGTAATGCAGGTAGTCCAGCTAGAGTGATTATTAGTTGCCCTGAAAAGGGTGAGGTTGTGGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTACTTGAGATTGGAGCCAAAAAATTTGGTGTCTATCCTGCCAAGGTTTTATGCAAAGATGGAGGTCAAATTGAAGATTTAGAGGTTATTAGAGATGGTGACCATCTGGTCTTTGTCTGTGCTGGTGGGGTTGTAGAATCCAAGTGTCCAACTCCAGCACCACTTTAG 2649 0.4507 MLGCGQEEIELSRDGSHYSLSTGILPSLGAKSNRRIKLRRFILSPYGRRYRIWETFLIILVFYTAWVSPFEFGFLKKPEPPLSISDNIVNGFFFVDIVLTFFVAYIDKTTYLIVDDRKQIAWKYARTWLAFDVVSIIPSELIQKLSPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLISVTLFAVHCAGCFYYLIAARYHDPKKTWIGSTMDNFLEHSLWSRYVMSIYWSITTLTTVGYGDLHPVNSREMTFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFNSLIDKVYLFKEVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELVVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVEIENMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASQGKENCVLLLLDYGADPNITDLDGNVALWEAMVGGHESVRKVLAENGANLQCGDVGQFACTAVEQNSLKLLKEIRRYGGDITLPSINSGTTALHVAVSEGNVEIVKYLLDHGASIDKPDKHGWTARGLADQQSHTEIKAIFDSTGDPKVQSFVTIPEKQSGFRFLGRFTSEPTMPSPLDGSFHGTDASWSQSQSQNRPRRRSSNYHNSLLGMMAAAHNGEKDLLLPLDMNNKASNVMKSSNAGSPARVIISCPEKGEVVGKLVLLPGSFQELLEIGAKKFGVYPAKVLCKDGGQIEDLEVIRDGDHLVFVCAGGVVESKCPTPAPL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00939 882 ProSiteProfiles KHA domain profile. 803 882 IPR021789 -
Vian1g00939 882 SMART ANK_2a 644 673 IPR002110 GO:0005515
Vian1g00939 882 SMART ANK_2a 546 575 IPR002110 GO:0005515
Vian1g00939 882 SMART ANK_2a 513 542 IPR002110 GO:0005515
Vian1g00939 882 SMART ANK_2a 579 608 IPR002110 GO:0005515
Vian1g00939 882 FunFam Potassium channel KAT2 356 492 - -
Vian1g00939 882 SUPERFAMILY cAMP-binding domain-like 293 488 IPR018490 -
Vian1g00939 882 SUPERFAMILY Ankyrin repeat 519 698 IPR036770 -
Vian1g00939 882 MobiDBLite consensus disorder prediction 739 760 - -
Vian1g00939 882 CDD CAP_ED 368 473 IPR000595 -
Vian1g00939 882 Pfam KHA, dimerisation domain of potassium ion channel 803 865 IPR021789 -
Vian1g00939 882 PRINTS EAG/ELK/ERG potassium channel family signature 63 70 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g00939 882 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g00939 882 PRINTS EAG/ELK/ERG potassium channel family signature 86 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g00939 882 PRINTS EAG/ELK/ERG potassium channel family signature 97 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g00939 882 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g00939 882 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g00939 882 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Vian1g00939 882 SUPERFAMILY Voltage-gated potassium channels 45 289 - -
Vian1g00939 882 Pfam Ion transport protein 51 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian1g00939 882 MobiDBLite consensus disorder prediction 731 760 - -
Vian1g00939 882 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Vian1g00939 882 ProSiteProfiles Ankyrin repeat region circular profile. 644 676 - -
Vian1g00939 882 ProSiteProfiles Ankyrin repeat region circular profile. 546 577 - -
Vian1g00939 882 SMART cnmp_10 368 485 IPR000595 -
Vian1g00939 882 Pfam Ankyrin repeats (3 copies) 618 681 IPR002110 GO:0005515
Vian1g00939 882 Pfam Ankyrin repeats (3 copies) 520 607 IPR002110 GO:0005515
Vian1g00939 882 Gene3D Jelly Rolls 333 493 IPR014710 -
Vian1g00939 882 FunFam Potassium channel SKOR 51 289 - -
Vian1g00939 882 Gene3D - 514 698 IPR036770 -
Vian1g00939 882 ProSiteProfiles cAMP/cGMP binding motif profile. 368 470 IPR000595 -
Vian1g00939 882 PANTHER POTASSIUM CHANNEL AKT1 16 866 IPR045319 GO:0005249|GO:0006813
Vian1g00939 882 Pfam Cyclic nucleotide-binding domain 388 472 IPR000595 -
Vian1g00939 882 Gene3D - 52 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00939 Vian-Chr1 9868821 9874969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00939 10 865 Ion Channels AT2G25600 62.543 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00939 K21867 - gmx:100819491 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00939 1 9868821 9874969 Vian1g00939 1 9868821 9874969 ECH