Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00938 ATGAAGGGGGAAGTACAGCTTCAGCCTCCACCGGTCATGCAAAACCCTAGTGATTCGGACCCTTTGCTCCTTAATCAGGAGGAGGAGGAGTCTCCGGGAAGCTCCGGTGAGATCAAAGATGACGAAGAAGACGTTGAGGCAGGCTTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCTGATCCAGAGGATGAATTAATATCTCCATGCATGTGCAAAGGTACTCAACAGTTTGTTCATCGCTCGTGTCTTGATCATTGGCGCTCTGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTAGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAGACTTCACCACCATTTGCTATTCTGAAGGATATGGCATCTTTCGCCATTTCCATTGTGGTAACTGCTACAGACATGGTGATTGCAGCTATTGGTGGCTTTGCGTACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAGGATACTGTCAAAGCATCCTATTCCATTTTATTATTGTATTGGAGTGCTGGCCTTTTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAACACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCCTGGATTGCTTTCCCGCTTCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCGTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAACTTACAAAGGAATACATAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGCCGCTTGAAAATGCTCAAGCTTTTGTGA 999 0.4525 MKGEVQLQPPPVMQNPSDSDPLLLNQEEEESPGSSGEIKDDEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTSPPFAILKDMASFAISIVVTATDMVIAAIGGFAYIMDKDGSFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHEGRLKMLKLL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00938 332 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Vian1g00938 332 MobiDBLite consensus disorder prediction 1 42 - -
Vian1g00938 332 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Vian1g00938 332 SUPERFAMILY RING/U-box 51 108 - -
Vian1g00938 332 SMART ringv_2 52 104 IPR011016 GO:0008270
Vian1g00938 332 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 332 - -
Vian1g00938 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
Vian1g00938 332 CDD RING_CH-C4HC3_MARCH 53 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00938 Vian-Chr1 9862325 9868005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00938 1 332 C3H Transcription Factor Family AT1G11020 73.913 7.81e-166 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00938 - - gmx:100818950 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00938 1 9862325 9868005 Vian1g00938 1 9862325 9868005 ECH