Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00925 ATGTGGAACTCTGCGGAGAACGCCTTCGCCAGGTCGGCCTCCTTCAGGGAGCAAGGGGAAGACGAGGAGGCGCTGCGCTGGGCGGCGCTGGAGAGGCTCCCTACTTATAAACGAGCGCGCCGGGGAATCTTCAAGAATCTCACTGGTGACATGAAGGAGATCGACGTTAGAGATCTCCAGTCGCAGGACCAGCGCCTTCTTCTTGAAAGGCTCGTCGACTGCGTCGACAATGATCCTGAGATCATCTTCCACCGCATGAGAAGTCGATTCAACGCAGTAGGTTTGGAGTTTCCGAAAATTGAAGTTCGATTTCAGAACTTGACTGTTGAGACTTACGTACATGTCGGTAGCAGAGCTCTGCCAACTATTCCTAATTTCATTTGTAATATGACGGAGGCTCTTTTAAGGCAGTTGCTGATATACAGAAGGAAGAGAAGCAAATTGACAATTCTAGCGGACATCAGTGGGATTATTAGACCTTCAAGGCTAACGTTGCTATTGGGTCCGCCAAGCTCCGGAAAAACAACACTACTATTAGCACTTGCTGGTAGGCTAGGACCCGGGTTGCAGATGTCTGGGAACATTACATACAATGGACATGGTCTGAAAGAGTTTGTTCCTCAGAGGACTGCTGCTTATATCAGCCAACAAGATTGGCATGTGGCAGAGATGACCGTGAGGGAAACTCTCCAGTTTGCTGGTCGTTGTCAAGGCGTTGGATTTAAATTTGATATGTTGCTAGAACTAGCCAGAAGAGAAAAGAATGCTGGAATAAAACCAGATGAAGATCTTGATCTATTCATGAAGTCATTTGCTCTTGGGGGACTAGAAACAAATCTTGTGGTGGAGTACATCATGAAGATATTAGGTTTGGACATATGTGGTGACACATTGGTGGGAGATGAAATGCTCAAGGGCATCTCAGGGGGGCAAAAGAAACGTCTTACAACAGGTGAACTATTAATTGGTCCAGCAAGAGTGCTATTCATGGATGAGATATCAACTGGTCTTGATAGTTCAACTACTTATCAAATTATCAGATATCTTAAGCATTCAACCCGTGCACTTGATGCGACCACAATTGTATCTCTTCTTCAACCAGCACCCGAGACCTACGAATTGTTTGATGATGTTATTCTTTTGTGCGAGGGTCAGATTGTATATCAAGGCCCCCGTGAAGCTGCTGTTGATTTTTTCAGACAAATGGGATTCAGTTGTCCAGAGCGGAAAAATGTAGCAGATTTCTTGCAAGAAGTAACGTCTAAGAAGGACCAAGAGCAGTACTGGTCTGTTCTCGATCGCCCTTACCGATATGTACCTGTTGGAAAGTTCGCCGAAGCATTTTCCTTATATCGTGAGGGCAGGCTTTTGTCTGAGCAACTAAATACACCTTTCGATAGACGCCATAATCATCCAGCTGCCTTGGCAACTCTTAGCTATGGCGCCAAAAGGCTTGAACTTCTCAAGACTAATTATCAGTGGCAGAAGCTTCTCATGAAACGGAATTCATTTATCTATGTTTTTAAGTTTGTTCAGCTACTTTTGGTGGCCTTAATTACAATGAGTGTTTTCTTCCGAACAACAATGCACCATAATACAATTGACGATGGGGGCCTATATCTTGGATCACTGTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACCGAGGTGTCAATGTTAGTTGCAAAACTTCCAGTCCTTTACAAGCACAGAGATCTGCACTTCTATCCTAGCTGGGCATATACACTGCCTTCTTGGTTCCTTAGTATCCCAACTTCCGCGATAGAGGCTGGATGTTGGGTGGCTGTCACATACTATGCAATTGGATATGATCCTTCGATTACCAGATTTTTTCAGCAGTTCTTGCTTTTCTTCTTTCTGCACCAGATGTCTATAGGTCTGTTTCGTTTGATAGGATCTCTGGGCCGAAATATGATAGTATCCAATACCTTTGGATCCTTTGCCATGTTGGTTGTAATGGCTCTTGGCGGATATATAATTTCTAGAGACCGTATACCTGTTTGGTGGATATGGGGTTTTTGGATTTCTCCTTTGATGTATGCACAAAATTCAGCTTCAGTAAACGAGTTTCTTGGACATTCTTGGGATAAGAAAGCTGGAAATCAGACGACCCACTCATTGGGTTTGGAAGTACTAAAACAGCGGAGTTTGTATGCAGAAAGCTATTGGTATTGGATTGGTCTTGGGGCAATGGTTGGATACACAATTTTGTTCAACATTCTATTTACAATATTCTTGGCTTACCTTAATCCCATGGGAAGACAACAAGCTGTAGTTTCAAAGGATGAGCTTCAAGAAAGAGAAAAGAGAAGAATAGGTGAAAGTGTTGTTATTGAGCTGAGAGAGTACTTGCAGCGATCGGCATCAAGTGGAAAGCATTTTAAGCAAAAAGGAATGGTTCTTCCATTTCAACCACTATCCATGGTTTTCAGCAATATCAATTATTATGTGGATGTTCCTTTGGAATTGAAACAACAAGGGATACTAGAGGACAGGTTACCGCTGCTTGTTAATGTTACTGGATCCTTTAGACCTGGTGTGTTGACAGCATTGGTTGGAGTAAGCGGTGCCGGAAAAACGACGCTGATGGATGTACTAGCTGGAAGAAAAACTGGTGGAGTCATAGAAGGGGGTGTATATATATCTGGTTATCCCAAAAGACAAGACACTTTTGCTAGAATTTCTGGTTACTGTGAGCAGACTGATGTTCATTCTCCTTGTTTGACTGTTTGGGAATCCTTACTGTTCTCTGCTTGGCTTCGATTGTCTTCAGATGTTGACTTGGAGACACAAAAGGCCTTCGTTGAGGAGATAATGGAGCTTGTGGAACTCACCCCGTTACGTGGAGCACTAGTGGGTCTACCCGGAATTGATGGTTTGTCAACTGAACAACGAAAACGGTTGACTATAGCAGTGGAACTGGTTGCCAACCCTTCTATAGTCTTCATGGATGAGCCCACTTCTGGATTGGATGCCCGTGCCGCAGCCATTGTGATGAGAACTGTGAGGAATATAGTTAATACTGGGAGAACAATAGTGTGCACGATCCATCAGCCTAGCATTGACATTTTTGAATCATTTGATGAGCTTCTGTGTATGAAAAGGGGAGGAGAGCTCATTTATGCTGGTCCACTTGGTCCTAAATCTAGTGAACTGATCAGTTATTTTGAAGCAATAGAAGGAGTTCCAAAGATCAGGCCTGGATATAACCCTGCTACGTGGATGCTAGAGGTTACATCGTCGGCTGAAGAAAACCGGCTGGGAGTGGACTTTGCAGAAATCTACAGAGGATCAAGCTTGTACCAATATAACCAAGAGTTGGTTGAAAGGTTGAGCAAGCCAAGTAGTAATTCAAAAGAATTACATTTTCCAACCAAGTACAGTCGTTCACCTTTTGAGCAGTTCCTAACTTGTCTGTGGAAGCAAAATCTTTCTTACTGGCGTAACCCTCAGTACACTGCTGTTCGCTTTTTTTACACCGTCATCATCTCATTGATGCTCGGTACGATATGCTGGAGATTTGGTGCTAAAAGGGAGACGCAGCAAGATATATTTAATGCCATGGGATCCATGTATTCGGCAATCCTCTTCATCGGTATTACGAATGGCACAGCTGTTCAGCCTGTTGTTTCCGTGGAAAGATTTGTTTCTTATAGAGAAAGAGCTGCAGGGATGTATTCGGCATTATCATTTGCATTTGCTCAGGTTGTTATTGAATTCCCTTATGTGTTCGCACAGGCTATTATATACTCTTCCATATTCTATTCCATGGGTTCCTTTATCTGGACTGTTGATAGGTTCATTTGGTACTTATTCTTCATGTATTTTACGATGTTATATTTTACCTTCTATGGAATGATGACAACGGCTATCACACCAAATCATAATGTTGCTGCCATCATCGCTGCTCCATTTTATATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCGTAAGAGAATTCCTATTTGGTGGAGATGGTATTACTGGGCAAACCCAGTAGCCTGGAGTCTTAATGGTCTCCTGACGTCACAGTACGGTGGTGACTATCATTCAGTGAAGCTCTCTGATGGGAACAAGATGAGCATAAGACAATTACTTGAAGCAGTGTTTGGGTACAGGCATGATTTCTTGTGGGTTACAGCTGTTATGGTAGCTGGATTCTGCATATTTTTTGCAGTTATATTTGCCTTCGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 4257 0.4285 MWNSAENAFARSASFREQGEDEEALRWAALERLPTYKRARRGIFKNLTGDMKEIDVRDLQSQDQRLLLERLVDCVDNDPEIIFHRMRSRFNAVGLEFPKIEVRFQNLTVETYVHVGSRALPTIPNFICNMTEALLRQLLIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHGLKEFVPQRTAAYISQQDWHVAEMTVRETLQFAGRCQGVGFKFDMLLELARREKNAGIKPDEDLDLFMKSFALGGLETNLVVEYIMKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATTIVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFRQMGFSCPERKNVADFLQEVTSKKDQEQYWSVLDRPYRYVPVGKFAEAFSLYREGRLLSEQLNTPFDRRHNHPAALATLSYGAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSAIEAGCWVAVTYYAIGYDPSITRFFQQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLVVMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTHSLGLEVLKQRSLYAESYWYWIGLGAMVGYTILFNILFTIFLAYLNPMGRQQAVVSKDELQEREKRRIGESVVIELREYLQRSASSGKHFKQKGMVLPFQPLSMVFSNINYYVDVPLELKQQGILEDRLPLLVNVTGSFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGGVYISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEIMELVELTPLRGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLCMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRPGYNPATWMLEVTSSAEENRLGVDFAEIYRGSSLYQYNQELVERLSKPSSNSKELHFPTKYSRSPFEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRETQQDIFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAIIYSSIFYSMGSFIWTVDRFIWYLFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPFYMLWNLFSGFMIPRKRIPIWWRWYYWANPVAWSLNGLLTSQYGGDYHSVKLSDGNKMSIRQLLEAVFGYRHDFLWVTAVMVAGFCIFFAVIFAFAIKSFNFQRR 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00925 1418 Pfam ABC transporter 846 997 IPR003439 GO:0005524
Vian1g00925 1418 Pfam Plant PDR ABC transporter associated 704 768 IPR013581 -
Vian1g00925 1418 FunFam ABC transporter G family member 34 831 1063 - -
Vian1g00925 1418 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 4 1418 - -
Vian1g00925 1418 Gene3D - 138 433 IPR027417 -
Vian1g00925 1418 Gene3D - 830 1060 IPR027417 -
Vian1g00925 1418 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Vian1g00925 1418 FunFam ABC transporter G family member 34 138 442 - -
Vian1g00925 1418 CDD ABCG_PDR_domain2 814 1052 IPR034003 -
Vian1g00925 1418 Pfam ABC-2 type transporter 366 419 IPR043926 GO:0140359
Vian1g00925 1418 Pfam ABC transporter 152 333 IPR003439 GO:0005524
Vian1g00925 1418 SMART AAA_5 854 1046 IPR003593 GO:0016887
Vian1g00925 1418 SMART AAA_5 160 385 IPR003593 GO:0016887
Vian1g00925 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 1053 IPR027417 -
Vian1g00925 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 408 IPR027417 -
Vian1g00925 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 408 IPR003439 GO:0005524
Vian1g00925 1418 Pfam ABC-2 type transporter 489 699 IPR013525 GO:0016020|GO:0140359
Vian1g00925 1418 Pfam ABC-2 type transporter 1142 1355 IPR013525 GO:0016020|GO:0140359
Vian1g00925 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 817 1070 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00925 Vian-Chr1 9664462 9675000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00925 853 1029 Calmodulin-binding Proteins AT2G36910 27.072 6.72e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00925 K08711 - gmx:100815410 2632.82