Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00920 ATGGCGATACATTTATACAAAACTTCTACCCCAAGCACACGCAATGGAACCGTAGACAGTCGTCAAGTAAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATAATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTCAAATTGATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATATGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAAAAATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAAGAGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTTGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGTCGTACTAAATAG 867 0.4187 MAIHLYKTSTPSTRNGTVDSRQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLKEVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00920 288 SMART Ribosomal_L2_C_2 123 265 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vian1g00920 288 Pfam Ribosomal Proteins L2, C-terminal domain 146 263 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vian1g00920 288 MobiDBLite consensus disorder prediction 268 288 - -
Vian1g00920 288 Hamap 50S ribosomal protein L2 [rplB]. 1 287 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vian1g00920 288 NCBIfam 50S ribosomal protein L2 3 287 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vian1g00920 288 Gene3D - 1 113 IPR012340 -
Vian1g00920 288 ProSitePatterns Ribosomal protein L2 signature. 230 241 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vian1g00920 288 MobiDBLite consensus disorder prediction 237 288 - -
Vian1g00920 288 SUPERFAMILY Nucleic acid-binding proteins 2 124 IPR012340 -
Vian1g00920 288 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g00920 288 Pfam Ribosomal Proteins L2, RNA binding domain 41 117 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vian1g00920 288 PANTHER RIBOSOMAL PROTEIN L2 30 286 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vian1g00920 288 FunFam 50S ribosomal protein L2, chloroplastic 117 208 - -
Vian1g00920 288 FunFam 50S ribosomal protein L2, chloroplastic 1 113 - -
Vian1g00920 288 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 14 288 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vian1g00920 288 FunFam 50S ribosomal protein L2 208 288 - -
Vian1g00920 288 SUPERFAMILY Translation proteins SH3-like domain 146 285 IPR008991 -
Vian1g00920 288 Gene3D - 117 208 IPR014722 -
Vian1g00920 288 Gene3D Ribosomal protein L2, domain 3 209 287 IPR014726 -
Vian1g00920 288 SMART Ribosomal_L2_2 41 117 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00920 Vian-Chr1 9590007 9591494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00920 52 247 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 33.019 6.17e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00920 K02886 - cave:30215254 541.576