Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00905 ATGTCATCAAGTGGAAGCCTTTGGAACTATGAGGAAGAAAAGGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAAGCCTCAAATGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAGCATTACCAGGTTCTAGTGGAGGATGTAAGTGCAATAGAGGCAGGTCACATACCATTCCCCAACTATACTTCTGAGGAAACCACCTCTTCAAATAAGGACTTCCATGGCTCTTCCAAGGCCACAAGTTCAGATAAAAGATCAAATTGTAACTATTCCACTGGTTTTTCTGGATTAGGACATGACTCCACCACTCACAGTACTGGTAAAGGAGCCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACTGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGACTGGAGAAGCATTTCAAGGAACTTTGTGATATCCAGGACTCCCACACAAGTAGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCTATGAATAGGGACAGAAGAAGGTCTAGTATTCATGACATAACTAGTGTGAACAATGGAGATGTGGCTAGTAATCAAGCACCGATTACAGGGCAACATAGCAGCACAGTTTCTTCAAGTACAATGGGTGTAGGACAATCACTGAAGCACAGAGTGCAGGGCCATATAGCACCTGGTTTAGGCATGTATGGAACACCAGTTGGACATCCTGTTGCTGCTCCTCCAGGGCACATGGCATCTGCAGTTGGAACTCCTGTCATGCTTCCTCCTGGACCCCATCCACATGCTCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCACCACCAATGCATCAATGA 906 0.4481 MSSSGSLWNYEEEKAFENAIAMHWIEEASNEQWEKIASAVPSKSMEEVKQHYQVLVEDVSAIEAGHIPFPNYTSEETTSSNKDFHGSSKATSSDKRSNCNYSTGFSGLGHDSTTHSTGKGALSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTVSSSTMGVGQSLKHRVQGHIAPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHAHPHPPYVLPLAYPMAPPPMHQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00905 301 PANTHER TRANSCRIPTION FACTOR KUA1 4 292 - -
Vian1g00905 301 MobiDBLite consensus disorder prediction 200 225 - -
Vian1g00905 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Vian1g00905 301 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Vian1g00905 301 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vian1g00905 301 MobiDBLite consensus disorder prediction 71 123 - -
Vian1g00905 301 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vian1g00905 301 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vian1g00905 301 CDD SANT 8 56 IPR001005 -
Vian1g00905 301 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Vian1g00905 301 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vian1g00905 301 Gene3D - 1 69 - -
Vian1g00905 301 CDD SANT 135 180 IPR001005 -
Vian1g00905 301 MobiDBLite consensus disorder prediction 71 134 - -
Vian1g00905 301 FunFam transcription factor MYB1R1 134 185 - -
Vian1g00905 301 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Vian1g00905 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vian1g00905 301 Gene3D - 134 186 - -
Vian1g00905 301 FunFam Transcription factor SRM1 1 69 - -
Vian1g00905 301 SMART sant 132 182 IPR001005 -
Vian1g00905 301 SMART sant 4 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00905 Vian-Chr1 9470439 9471547 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g00905 Myb_DNA-binding 8.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00905 - - gmx:778049 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00905 1 9470439 9471547 Vian1g00905 1 9470439 9471547 ECH