Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00903 ATGAGCTGGCGCAGGGTGTTGAACTCAGCACAGGCCCTGGCCGCGCACACCTTCCTGTTGTGCTTCACTCTCTTCCTCGTTCTCAAACTTGATCACGATCTCTCTTGTTCTTGGTGGGTAGTATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCATCTGCTCCACATCTTGGCTATGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGACGAAGAAAACTTGAGTGACGAGGCAATATGGGAAACTCTTCCGTGGTCCAATCCTGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTACTATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGATGAAAATCGATCCGAGGGGAGAATCTGTAGCCTTCAAGAGATAGGGGGGCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTCTGCTGTATATATACCACTTCCAGTTATTTTCTCTCCGCTTTTCCTACTTCAAGGAGCTGGAGTAATGTTATCTGCATCTAAATTAGTGGAGAAACTTGTGCTTCTCCTTCGAAGTGGAGCTGCTGCAGGAATTTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCCAGATTGTTGGGTTGGTGGTCAATTGACGAAGGGAGTCGGGAAGAACAAGCACGAATATACCATGAGGGAGCATCTGGGAACACCATCAGAACCTCGTCGGTCCTCCGTTCACCTCCAATGCATCTCGCAATAGCCACCAGCACTGGAAAAACCATTGAGAAAGTGTTGTGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGCAGGCATCGCGTTCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCTATTGCCGAGCGTCTGCCTGTTTATGATGTTTAG 1080 0.4463 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHDLSCSWWVVFLPLWMFHGVVARGRFSLPAPSAPHLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENLSDEAIWETLPWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTDENRSEGRICSLQEIGGHFMKVPIIVFQVLLCMHLEGTPASAVYIPLPVIFSPLFLLQGAGVMLSASKLVEKLVLLLRSGAAAGIYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARIYHEGASGNTIRTSSVLRSPPMHLAIATSTGKTIEKVLCRICFEGEINVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00903 359 Pfam Zinc finger, C3HC4 type (RING finger) 309 351 - -
Vian1g00903 359 Pfam Transmembrane Fragile-X-F protein 28 64 IPR019396 -
Vian1g00903 359 Pfam Transmembrane Fragile-X-F protein 69 117 IPR019396 -
Vian1g00903 359 Pfam Transmembrane Fragile-X-F protein 118 208 IPR019396 -
Vian1g00903 359 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 70 117 - -
Vian1g00903 359 SUPERFAMILY RING/U-box 300 354 - -
Vian1g00903 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 359 IPR013083 -
Vian1g00903 359 ProSiteProfiles Zinc finger RING-type profile. 312 347 IPR001841 -
Vian1g00903 359 SMART ring_2 312 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00903 Vian-Chr1 9452464 9461210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00903 1 359 C3H Transcription Factor Family AT1G73950 52.164 1.09e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00903 - - gmx:100791390 563.533