Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00893 ATGGGTGTGGACTACTATAAGATTTTGCAGGTCGACAAGAATGCCACGGATGAAGATTTGAAGAAAGCTTACAGAAAGCTTGCAATGAAATGGCACCCTGACAAGAATGCAACCAATAAGAAAGAGGCTGAGACTAAGTTCAAGCAGATATCTGAAGCCTACGAGGTTTTGAGTGATCCCCAGAAGAGAGCCATTTATGATCAGTACGGAGAAGAAGGGCTTAAAGGGCAAGTACCACCTCCAGATGCTGGTGGAGCAACGTTCTTCCAGACTGGGGATGGTCCAACAGCATTCAGGTTCAATCCAAGAAACGCAAATGACATATTTTCTGAGTTTTTCGGGTTTTCAAGCCCAAGTCCATTTAGTGGTGGTGGTGGTGATGGCATGAGGGGTGGTTCCTTCGGTGGAGTTTTTGGCAATGGTATGTTTAGTCCATTTGCAGAAGGAAGGCCAATGAATCAGGGTCCACGCAAGGCACCTCCTATAGAGAAGAGGTTGCCTTGCACCCTTGAAGAACTCTATAAGGGCACTACCAAAAAAATGAAGATCTCAAGGGAGATTGCTGATGCAAGTGGGAAAACTTTACCTGTGGAGGAAATATTGACCTTGGAAATTAAAGCAGGATGGAAGAAGGGGACAAAGATCACATTCACAGAGAAAGGAAATGAGCTTCCAAATATGATTGCTTCTGATCTTGTGTTTGTTATTGATGAGAAACCTCACCCAGTGTTTACTAGAGATGGTAACGATTTGGTTATGACACAAAAAGTGTCACTTGCAGAAGCTCTTACGGGTTACACTGTTCATCTTACAACACTGGATGGAAGGGCTCTAAACATTACCATTAACAATGTTATTCATCCAAACTATGAAGAGGTTGTCCCAAGGGAAGGGATGCCAATTTCAAAAGATCCTTCAAAGAAGGGTAATCTTAGAATCAAATTCAACATCAAATTCCCAGCAAAGTTGACATCAGAGCAAAAGGCAGGAATGAAGAAGCTGCTGTCATATTGA 1014 0.428 MGVDYYKILQVDKNATDEDLKKAYRKLAMKWHPDKNATNKKEAETKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGATFFQTGDGPTAFRFNPRNANDIFSEFFGFSSPSPFSGGGGDGMRGGSFGGVFGNGMFSPFAEGRPMNQGPRKAPPIEKRLPCTLEELYKGTTKKMKISREIADASGKTLPVEEILTLEIKAGWKKGTKITFTEKGNELPNMIASDLVFVIDEKPHPVFTRDGNDLVMTQKVSLAEALTGYTVHLTTLDGRALNITINNVIHPNYEEVVPREGMPISKDPSKKGNLRIKFNIKFPAKLTSEQKAGMKKLLSY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00893 337 FunFam DnaJ subfamily B member 13 3 124 - -
Vian1g00893 337 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Vian1g00893 337 CDD DnaJ 4 59 IPR001623 -
Vian1g00893 337 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vian1g00893 337 FunFam Dnaj homolog subfamily b member 158 239 - -
Vian1g00893 337 CDD DnaJ_C 160 323 - -
Vian1g00893 337 Gene3D - 241 321 - -
Vian1g00893 337 Pfam DnaJ domain 4 67 IPR001623 -
Vian1g00893 337 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Vian1g00893 337 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vian1g00893 337 Gene3D - 161 239 - -
Vian1g00893 337 FunFam DnaJ subfamily B member 13 241 321 - -
Vian1g00893 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 329 IPR008971 GO:0006457|GO:0051082
Vian1g00893 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 156 250 IPR008971 GO:0006457|GO:0051082
Vian1g00893 337 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vian1g00893 337 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vian1g00893 337 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vian1g00893 337 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vian1g00893 337 Gene3D DnaJ domain 3 122 IPR036869 -
Vian1g00893 337 SUPERFAMILY Chaperone J-domain 3 119 IPR036869 -
Vian1g00893 337 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00893 Vian-Chr1 9318592 9320271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00893 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 5.02e-10 58.9