Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00879 ATGGCTGGGGGTAGAAGGAGGAGGCACCACTTCGGCAGAATCCATGCATTCACGTGTGGGAAAGCTTCCATGAAGGAAGAACATTCACTGATTGGAGGCCCTGGGTTCTCAAGGAAAGTCTATTGCAATGACCCTGAACGTGCAACCGCGAGTCTTCTCAATTATGGAGACAATTATGTCAGAACAACTAAGTATACATTGGCCACGTTCCTGCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTTGCAAATTTCTACTTCCTCGTTTGTGCAGTTTTGTCTTTCTTTCCGGTGTCTCCTTACTCTGGAGTCAGTAATGTTGTCCCTCTACTGGTTGTGGTAGCTGCCACAATGGTCAAAGAGTTCGTTGAAGATTTTAGGAGAAAACAACAGGATATAGAGATGAATAACAGAAAAGTTAAAGTGCATGGTGGAGGTGGTGATTTTTCCTATTCTAAATGGAGGGATTTGAAAGTTGGAGATATAGTGAGGGTGGAAAAAGATGAATTTTTCCCTGCTGATCTTATCTTACTTGGGTCAAATTATGATGATGCAATTTGCTATGTTGAGACTATGAATCTTGATGGAGAGACAAATCTGAAACTGAAACAAGCATTGGAACAAACTTCAAAGTTGCAAGAAGATTCGAGCTTTCAAAATTTCAGGGCTGTCATCACATGTGAAGATCCAAATGCAAATTTGTACACATTTGTTGGAAGCATGGAGTTTGGGGATCAACAGTATCCTCTTGCACCTCAACAGCTACTTCTCAGGGACTCTAAGCTGAGGAACACAGATTTTGTTTATGGTGTGGTAATCTTTACTGGACATGACACAAAGGTTATGCAGAATGCAACAGACCCGCCATCCAAGAGAAGCAAAATCGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCTTTCTACTTATTTTGATTTCTTTCATTGGGTCCATATTCTTTGGGATTACAACAAATGATGACATTGAAAATGGAAAAATGAAGAGATGGTACCTTAGACCAGATGATACCGAAATTTTCTATGACCCTAATGAACCTGTAGCTGCTGCAATTCTGCATTTCTTGACAGCACTTATGTTGTACAGTTACTTGATTCCGATTTCCTTGTATGTATCCATTGAAATTGTGAAGGTTCTTCAAAGCATTTTCATCAACCAGGATGAGAATATGTATTATGCGGAAACTGACAAGCCAGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGCCAAGTAGATACCATACTTTCAGATAAGACAGGAACTTTGACTTGTAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGGTTGCTTATGGCCGAGGAGTTACAGAAGTTGAGAGAGCTCTATCTATGAGACATGAATCAGATTCAGGTAAAGAGTTGAAAGAAAACAACAGCAGTGCAATGGTTCGTGAATCAAAGTCATCCATTAAAGGGTTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGATCAAAGAACCCAATGCCAATGTAATCCAGAATTTCCTAAGGCTTCTCGCTGTATGCCACACTGCAATACCAGAAGTTGATGAAGGAACTGGGAAGGTTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCGGCCAGGGAACTTGGATTTGAATTTTATGAAAGGACACATGCAGCTATTTCACTGCGTGAATTAGACCCCATAACAGGCCTGAAAGTTGAAAGGTCCTACAAACTTCTGAACGTATTAGAGTTTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGGGAAACTGTTGCTTCTCAGCAAAGGCGCTGACAGTGTAATGTTTGAACGAATTGCAAATAATGGAAGGCAATTTGAAGAGAACACAAAGCAGCACATCAGTGAATATGCTGATTCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTAATGAGGAAGAGTACTATCAATTTAATAAAGAGTTTACAGAGGCCAAGAACTTAGTGAGTGCAGACCAGGAGCAGCTTGTTGAGAGGATAATACAAAATATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGATAAAATGGAGACAGCAATTAATATAGGATTTGCTTGTAGCTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGATACTCCTGAAATCAAATCATTAGAGAAAATGGAGGACAAGGCTGCTGCTGATGCGGCAATTAAGTCAAGTATTATTCGTCAACTAAGGGAAGCAAGTGCATTACTTTCTTCACCAGATGAAAGCTATGAGGCCTTAGCCCTGATCATTGATGGGAAGTCTCTTACATATGCACTGGAAGATGATGTAAATGATTTGTTTCTTGGACTTGCCATTGGCTGCGCATCTGTTATCTGCTGTCGTTCCTCTCCCAAGCAGAAAGCACTTGTTACAAGACTGGTGAAGATGAGAACTGGTAGTACAACACTAGCTATTGGAGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGAATTGGTATTAGTGGTGTGGAAGGCATGCAGGCAGTTATGTCAAGTGACATTGCAATAGCCCAATTTCGGTTTCTTGAGCGGTTGCTTCTTGTGCACGGACATTGGTGTTACAGAAGGATATCATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTCGGCTTCACTCTGTTCTTCTTTGAGATATATGCCTCATTCTCTGGCCAGGCTGCATACAATGATTGGTTCATGTCACTATATAATGTCTTCTTTACTTCACTTCCTGTAATTGCATTGGGAGTGTTTGATCAGGATGTCTCTTCCAAACTATGTCTCAAGTTTCCATTATTATACCAAGAAGGCATCCAAAACATTCTATTCAGCTGGAAACGGATCATCGGTTGGATAGTTAATGGAGTTGTGACTTCTGCCATCATATTCTTCTTCTGCATCCGTACCATGGAACATCAGGCATTCCGCAAAGGGGGTGAAGTGGTGGAGCTGCAAGTTCTTGGTGCCACCATGTACACCTGCGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTATGTACAGCATATATTCATCTGGGGAAGCATTATATTCTGGTATATATTCCTCATGGCATATGGAGCCATAGACCCTTCCTTCTCCACCACTGCCTATAAGGTCTTCGTTGAAGCTCTTGCACCAGCACCATATTTCTGGATCATCACTTTGCTCATTCTCATTGCTTCCCTTCTTCCATATTTCGTCTATGCTTCCATCCAAATGCGTTTCTTCCCCATGTACCATCAAATGATTCAGTGGATAAGGAAGGACGGCCAAACAAGTGATCCAGAATACTGCAATGTGGTAAGGCAGCGATCGATAAGAAACACCACAGTTGGATTCACAGCTCGTTTGGAAGCATCCAAACGTTTTAATGCATCCAGAAGAGTTGAATCAAGCACAAAACCTGAAACAACATCCATAATATTTGAATCATCCAAACGTTCTGAAGGGCAGTCTGAGGACCGATAA 3657 0.4102 MAGGRRRRHHFGRIHAFTCGKASMKEEHSLIGGPGFSRKVYCNDPERATASLLNYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVCAVLSFFPVSPYSGVSNVVPLLVVVAATMVKEFVEDFRRKQQDIEMNNRKVKVHGGGGDFSYSKWRDLKVGDIVRVEKDEFFPADLILLGSNYDDAICYVETMNLDGETNLKLKQALEQTSKLQEDSSFQNFRAVITCEDPNANLYTFVGSMEFGDQQYPLAPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFFLLILISFIGSIFFGITTNDDIENGKMKRWYLRPDDTEIFYDPNEPVAAAILHFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDENMYYAETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERALSMRHESDSGKELKENNSSAMVRESKSSIKGFNFMDERIMNGNWIKEPNANVIQNFLRLLAVCHTAIPEVDEGTGKVSYEAESPDEAAFVIAARELGFEFYERTHAAISLRELDPITGLKVERSYKLLNVLEFSSARKRMSVIVRDEEGKLLLLSKGADSVMFERIANNGRQFEENTKQHISEYADSGLRTLILAYRELNEEEYYQFNKEFTEAKNLVSADQEQLVERIIQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPEIKSLEKMEDKAAADAAIKSSIIRQLREASALLSSPDESYEALALIIDGKSLTYALEDDVNDLFLGLAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEIYASFSGQAAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGIQNILFSWKRIIGWIVNGVVTSAIIFFFCIRTMEHQAFRKGGEVVELQVLGATMYTCVVWVVNCQMALSISYFTYVQHIFIWGSIIFWYIFLMAYGAIDPSFSTTAYKVFVEALAPAPYFWIITLLILIASLLPYFVYASIQMRFFPMYHQMIQWIRKDGQTSDPEYCNVVRQRSIRNTTVGFTARLEASKRFNASRRVESSTKPETTSIIFESSKRSEGQSEDR 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00879 1218 Gene3D - 694 902 IPR023214 -
Vian1g00879 1218 FunFam Phospholipid-transporting ATPase 540 698 - -
Vian1g00879 1218 SFLD C1.7: P-type atpase like 406 913 - -
Vian1g00879 1218 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 485 700 IPR023299 GO:0000166
Vian1g00879 1218 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 33 1153 - -
Vian1g00879 1218 MobiDBLite consensus disorder prediction 1189 1218 - -
Vian1g00879 1218 NCBIfam phospholipid-translocating P-type ATPase 55 1147 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vian1g00879 1218 Gene3D - 115 286 - -
Vian1g00879 1218 Pfam Cation transport ATPase (P-type) 533 623 - -
Vian1g00879 1218 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Vian1g00879 1218 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vian1g00879 1218 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Vian1g00879 1218 PRINTS P-type cation-transporting ATPase superfamily signature 748 758 - -
Vian1g00879 1218 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1140 IPR023298 -
Vian1g00879 1218 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vian1g00879 1218 MobiDBLite consensus disorder prediction 1193 1209 - -
Vian1g00879 1218 SFLD p-type atpase 406 913 IPR044492 -
Vian1g00879 1218 FunFam Phospholipid-transporting ATPase 698 902 - -
Vian1g00879 1218 FunFam Phospholipid-transporting ATPase 116 286 - -
Vian1g00879 1218 SUPERFAMILY HAD-like 419 917 IPR036412 -
Vian1g00879 1218 SUPERFAMILY Calcium ATPase, transduction domain A 146 285 IPR008250 -
Vian1g00879 1218 NCBIfam HAD-IC family P-type ATPase 828 945 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00879 1218 NCBIfam HAD-IC family P-type ATPase 359 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00879 1218 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Vian1g00879 1218 Gene3D - 536 676 IPR023299 GO:0000166
Vian1g00879 1218 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00879 Vian-Chr1 9150032 9155476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00879 10 1188 Primary Pumps ATPases AT3G25610 70.195 0.0 1771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00879 K01530 - gmx:100799312 2135.53