Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00876 ATGTATGCTAAAAATACTCTCATGGAAGACATAGACAGCTCAGAACTTTCACACCAATCTCAAAACCAAAACAAGAATCTTTCCTTGATGGCTATTGAAATAGACAAGCCCTATGAGAAGAGAGTGATGAAGATTCCAAAAGTAGGAAAAAAGATTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGGTGGATTGCTGAGATCAAGGATTCTTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACACTCATGAAGAAGACTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGTTATGAAGAACCATGCACTTTCAGCATCTCTTTATTCCACATTCATGCCCAGCTGGAAAAACCAGATCATGCTGAGAGATGAACACGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCGGAACAAGGCTCTGCCTGCTGTGGAATTTCTTTCGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGTTTCTTCTCATGATGAAACCCCCTAA 654 0.4083 MYAKNTLMEDIDSSELSHQSQNQNKNLSLMAIEIDKPYEKRVMKIPKVGKKIEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPGIMNTHEEDYSILGKNPRSYQLLKHAVMKNHALSASLYSTFMPSWKNQIMLRDEHDTLVEETIVCSIPEQGSACCGISFGSSKVYSSVVVAPSFSVSSHDETP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00876 217 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Vian1g00876 217 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Vian1g00876 217 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Vian1g00876 217 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Vian1g00876 217 MobiDBLite consensus disorder prediction 1 22 - -
Vian1g00876 217 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Vian1g00876 217 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Vian1g00876 217 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Vian1g00876 217 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Vian1g00876 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 138 - -
Vian1g00876 217 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00876 Vian-Chr1 9134560 9135213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00876 50 113 AP2-EREBP Transcription Factor Family AT5G19790 68.750 5.72e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian1g00876 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00876 - K09286 var:108340966 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00876 1 9134560 9135213 Vian1g00876 1 9134560 9135213 ECH