Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00863 ATGGCAGATGTAACCACCTACCCCCGCCACCACCGCCACTCCCGCCACCCCGACGATGACCAAACTCTGATTCCTTTCCCTTATTGGGACTTAGATTTTGATTTTGATCCCGAATTCCACTCCAACCGTTTCTCCCTCACCGACCGCGAGAACCAGGTCAATTTCGTCATGGATCTCTTTCACCAGCGCGTTGAACAATCGCAACTCACCGATCCCCTCTCTAACGACGCCTTTTTCGGCGTTATCGACGCCCTAGACGCCATCGACCTTGGCTTCCCCGCCGCCGACGACTTACTTGTCGGAGGTCGGCTCTCCGTCGGATCTGACTCCGACGAATCGCTCTACCAGTCTGGAAACATCGACAGCGTGCTCGGGATCTGCACGCACTCGGAGGAAGAGTACAACGTGAACGACGACGTTTCGAACATCCCTCTCTGCTTGGACGCGCTTCAATTGGAAGACAACAGAGACAGTTATGATGATTTCGAGTGGGAGGAAGTGGTCGACGAGAGAGAAGTTCTGAGCATGTTCGACGACACCTCCGTTTCCGTCTCCTTTGGAATCGAAGAGGAGGCGGAGGAGGAAGTAGAATTTGAAATGGAGACCAACAATTTGGGGTGGCAGGTTCTGTTGAACGCCAATTTGGAGGGAACGAATTCCGAGCCGTATTTCGGAGACAACGAGGACTTCGTGTACGCCGCCGAGTACGAGATGTTCAGCCAATTCAACGACGTCGCCTTCGTCGGGAAGCCTCCGGCGTCCGTCTCCGCCGTGAGGAAACTGTCGGCGGTGGTCGTGAGCGCTGTTGACGTGGCAAACGGAAACGTGGTTTGCGCGGTCTGTAAGGAGGAGTTTGGGGTTGGGGAAGAGGTGAAGCAGTTGCCGTGTTCGCATCGTTATCACGGGGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTTTGAGTTTCCCACTGATGATGCTGATTATGAGCAGAGGAAGGCACATACATCTGTTATGTGA 1020 0.5441 MADVTTYPRHHRHSRHPDDDQTLIPFPYWDLDFDFDPEFHSNRFSLTDRENQVNFVMDLFHQRVEQSQLTDPLSNDAFFGVIDALDAIDLGFPAADDLLVGGRLSVGSDSDESLYQSGNIDSVLGICTHSEEEYNVNDDVSNIPLCLDALQLEDNRDSYDDFEWEEVVDEREVLSMFDDTSVSVSFGIEEEAEEEVEFEMETNNLGWQVLLNANLEGTNSEPYFGDNEDFVYAAEYEMFSQFNDVAFVGKPPASVSAVRKLSAVVVSAVDVANGNVVCAVCKEEFGVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRFEFPTDDADYEQRKAHTSVM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00863 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 325 IPR013083 -
Vian1g00863 339 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Vian1g00863 339 FunFam E3 ubiquitin-protein ligase RING1-like 239 325 - -
Vian1g00863 339 PANTHER SI:CH211-59O9.10 45 324 - -
Vian1g00863 339 SUPERFAMILY RING/U-box 262 325 - -
Vian1g00863 339 CDD RING-H2_RNF126-like 278 319 - -
Vian1g00863 339 SMART ring_2 278 318 IPR001841 -
Vian1g00863 339 Pfam Ring finger domain 278 319 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00863 Vian-Chr1 9006559 9007578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00863 224 334 C3H Transcription Factor Family AT3G02340 50.000 2.63e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00863 - - gmx:100794303 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00863 1 9006559 9007578 Vian1g00863 1 9006559 9007578 ECH