Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00862 ATGGGGTCGTCGTCGGCGGCGTCGTTAAGTTCTCCAAAGAAGAGAGCGAAATCCCAGGTAGAGGAGGATGAGGACGACGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGAGCGAGGGGTTTCGATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTCTGCATCATGGAATGGGCTAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCCATGCACGGCGTATTTTCTTCCTCCCGGGACGTGAAGGTCCCTCATCGTGACCAGGCCTATCATCCTCATGGGAATGTGGCAATTGGTCCTCTCGATTCTTATGGCGAAACCAAATGTGGTGTTTGTCGTGCTGGGACAGATGAACATTTTCTACTACTTTGTGATCTTTGTGATTCTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCACGGGGGACCAATGCCAATGAAGAATCAGACCAACAATGTGTTGTGCCAGAGGCTGAGCCAAGTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGGTTAAAAGACCAAGGGCATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGTAGATTCAAAGGAAAAAGTCCTGCCGAAGGTGTCAATAGTATGCAGCGTAATATTGGGGCATTTCGTGAGAACTGGAATGCTTTGAGGAGTGGTTCATTACGGTTCCATTGTGATGCAGATCAAGCCAGCAGTACGGTTAGTCAAAAGCAAGATTCTAGATCATTATCACATGGCAAACTATATGATTCACAATCCGGGGCTTCCACAAGCGTGCAGCAATCCACTGTCCAGGGTGGTCCTTCTTCTAGCAAAACGTTGAATGAGAGAGTGTTTAAAGATAATGTTGACAAGGCTTGGAAAATGGTGGACAGAGCAAGGAGGAAGCAAGTAAATCCTCAAAGAATTAGAAGCAATCGGCAGGGAGTAGATAGACCCTCATGCAGTGGAGCTCGTAAAACATCAGTTGAACACTCTAATTTCCCAGAACTGAAAGATCAACATTCCAAAGAATTAAACTTAAGGAACACTGCGAAAGAGAAGCAGTGTGACTATTCTAGACTCTTCCAGAATTTAAAAAATTGCTCAACTCTAAAGTTGGAAGAGAAAAAGAAAAGTAGAGTTAGATGTGAGGAGATGATACACCGTGTAAGGGACCATACTACTCATTCAGAAGGATATTGTGAAAGTCCATTGTCTAGAAAGGTCCCTACTAATATCCAGGGTGGTGCTCCATTTCGTGAAGAAGAGAGAAATGCTTGCCAGGTAACTTCGGTAGATTTAGCTTCCTCGCGTGGCAAGTTTGTTAGTGACCTCTCCCCTTGTAAGGACGTGGATCTTGTCAATGAAGAAAAGAAATTAGCTGCTAGTCTCGAGGATGGAAGCACAGGAAAAACTGACGATGCAAAAACTGAGATCCAGTCTCTTGTCAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCTAGGCAGGCCACCCATACCATCTTGGCTGCCTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTATGCTGTCATTCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCGAATTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAACGTTGTCAGTTCCACCATGATGGAGAAAGTGGGTTGTGCTTGA 1836 0.4515 MGSSSAASLSSPKKRAKSQVEEDEDDEESVCCGICYAERGVSIAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPHGNVAIGPLDSYGETKCGVCRAGTDEHFLLLCDLCDSASHTYCVGLGYTVPEGDWFCHDCAISRGTNANEESDQQCVVPEAEPSETVDIFDIVRETGSRVVKRPRASPLQQNLSSPSAIPLSDRLSRFKGKSPAEGVNSMQRNIGAFRENWNALRSGSLRFHCDADQASSTVSQKQDSRSLSHGKLYDSQSGASTSVQQSTVQGGPSSSKTLNERVFKDNVDKAWKMVDRARRKQVNPQRIRSNRQGVDRPSCSGARKTSVEHSNFPELKDQHSKELNLRNTAKEKQCDYSRLFQNLKNCSTLKLEEKKKSRVRCEEMIHRVRDHTTHSEGYCESPLSRKVPTNIQGGAPFREEERNACQVTSVDLASSRGKFVSDLSPCKDVDLVNEEKKLAASLEDGSTGKTDDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTMMEKVGCA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00862 611 PANTHER F18C1.6 PROTEIN 12 608 - -
Vian1g00862 611 SMART ring_2 32 72 IPR001841 -
Vian1g00862 611 Pfam PHD-finger 122 166 IPR019787 -
Vian1g00862 611 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Vian1g00862 611 MobiDBLite consensus disorder prediction 275 319 - -
Vian1g00862 611 MobiDBLite consensus disorder prediction 336 382 - -
Vian1g00862 611 MobiDBLite consensus disorder prediction 368 382 - -
Vian1g00862 611 ProSiteProfiles Zinc finger PHD-type profile. 119 168 IPR019787 -
Vian1g00862 611 SUPERFAMILY FYVE/PHD zinc finger 115 167 IPR011011 -
Vian1g00862 611 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g00862 611 Pfam Ring finger domain 32 73 IPR001841 -
Vian1g00862 611 SUPERFAMILY RING/U-box 21 80 - -
Vian1g00862 611 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vian1g00862 611 SMART PHD_3 121 166 IPR001965 -
Vian1g00862 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 180 IPR013083 -
Vian1g00862 611 MobiDBLite consensus disorder prediction 275 321 - -
Vian1g00862 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00862 Vian-Chr1 8979222 8987690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00862 113 169 C2H2 Transcription Factor Family AT3G01460 37.931 7.50e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian1g00862 PHD 5.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00862 - - gmx:100808541 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00862 1 8979222 8987690 Vian1g00862 1 8979222 8987690 ECH