Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00861 ATGACTGCCAACGGAGGGAGTTGTCTGAAGACTCATGATTTCCTGCAGCCACTGGAGCGGCTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCCACGGATGAAATATCATGGGTTGTTGAGAAGGCAGGACCTTCGGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCATATGTTAATAATAACAATAACAATAATAATCAAAGGCTTCCCAAAGCGGAGACGTCTCTTTTTGCGCGTCAGGCAACTAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCGTATACTACTTCGAGCGGTTTCACTTTGTGGGAAGACTCATCGGGGAAGAGGGGCAAAACAGGAAAGGAGAATAATTCGGGCGACAGACCCTCTACTGGAGAGTGTGCGGCGACAAAGCTAGGGCAGTGGACATCAACGGAGCGGACCTCACAGTCGTTTTGTACCAATCGTCACGACAGCTTCAGCCCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATGGAAATGATGAAGTCCGCAAGGGATAGTGCCCAGGATGAAGTGCTGGAGAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATAACCAAAGAGAGCTAAGGGTGAAAGTGGATGGTAAGAGTACCGATCAAAAGCCAAATACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCAAGAAAAATTGATGCCATGGCAGAGAAATAATGACAAGCCAGCAGAAAACTTCCAACATCGTGGCACTGATAATGGGTCAAGTCCATCTCCAGCACTGCTTTTTTCTTCAAAGAATGAGGAGAGAAATATTAGCATCTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGTACAGCAACTACCTCCAAGACAGTGGACCATCAGGCCGGAATAGTGAATAACGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCCCTCCAGCCCAAATGGGTGGTCCAGGGGGAGTAGTGTCTCAGGTCGCACATATACCGGTTTCTGATGCCGAGAACAAATATCAACCTTCAGTGGAGTGTCAGACCATGGCGGCTACCAGTGAAAAGCTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGCATACGCTTACACATGCACTGCAAAGTTCAGGAGTGGATCTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAACTGTACCCGTGTCAGTGTGTGGTGCTAAGGATGGTGAAGTACCTTCTAACAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCAGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAGAAATTAA 1599 0.4528 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVNNNNNNNNQRLPKAETSLFARQATSTDRNDENSNCSSYTTSSGFTLWEDSSGKRGKTGKENNSGDRPSTGECAATKLGQWTSTERTSQSFCTNRHDSFSPRSSSQTTGQKNQSFMEMMKSARDSAQDEVLENEETFFLKKEPSNNQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEQEKLMPWQRNNDKPAENFQHRGTDNGSSPSPALLFSSKNEERNISISPTIPGSTQNVESGLSTATTSKTVDHQAGIVNNAFPIPISSQLNFFPPAQMGGPGGVVSQVAHIPVSDAENKYQPSVECQTMAATSEKLKEKELAIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTVPVSVCGAKDGEVPSNNNQKMMRSRVASSGKSDQAIKKLKICRN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00861 532 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 9 529 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vian1g00861 532 MobiDBLite consensus disorder prediction 497 519 - -
Vian1g00861 532 Pfam Helix-loop-helix DNA-binding domain 231 280 IPR011598 GO:0046983
Vian1g00861 532 CDD bHLH_AtBIM_like 228 304 - -
Vian1g00861 532 MobiDBLite consensus disorder prediction 340 359 - -
Vian1g00861 532 MobiDBLite consensus disorder prediction 316 330 - -
Vian1g00861 532 MobiDBLite consensus disorder prediction 111 177 - -
Vian1g00861 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 300 IPR036638 GO:0046983
Vian1g00861 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Vian1g00861 532 Gene3D - 226 301 IPR036638 GO:0046983
Vian1g00861 532 SMART finulus 235 285 IPR011598 GO:0046983
Vian1g00861 532 MobiDBLite consensus disorder prediction 127 177 - -
Vian1g00861 532 FunFam BHLH domain class transcription factor 227 299 - -
Vian1g00861 532 MobiDBLite consensus disorder prediction 306 330 - -
Vian1g00861 532 MobiDBLite consensus disorder prediction 202 245 - -
Vian1g00861 532 MobiDBLite consensus disorder prediction 499 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00861 Vian-Chr1 8964765 8971228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00861 6 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.382 7.23e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g00861 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00861 - - gmx:100808016 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00861 1 8964765 8971228 Vian1g00861 1 8964765 8971228 ECH