Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00853 ATGTACCTTTTCCTTCCTCTGTCTCGTTTCTTCCTCTCACATTCTTCCTCTCCCATTGAATTGGTAGCAGTGAGGCAATCGTGGAGAAGCTTCAAGAATTTCTCAATGGGAAGGGGAAGAGTGGAGTTGAAAAGGATCGAAAACAAGATCAACAGGCAAGTCACCTTCTCAAAGAGAAGGTCTGGTTTGATCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTGGCTCTCATAGTCTTCTCTACTAAAGGCAAACTTTTGGAATACTCTAACCAGCCTTCTATGGAAAGAATTCTTGAACGGTATGAGAGGCATTCGTATGCGGAGAAGCAAGAAGGTGCAGCTGATCAACCACCAAATGAAAACTGGGCTATAGAACACGAAAAGAATTTCATGGGAGAAGAGCTTGATAACATAAATCTTAGAGGACTTCAGAGTTTAGAACAACAACTTGATTCCGCCCTCAAACACATTAGATCACGAAAGAACCAAGCCATGCATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGCACTTCGGGAACGTAACAACTTGCTCGCCAAGAAGATAAAAGAAAAAGAGAAGGCAGTGGTTCCTCAAGAACAGGAGGGGTTGCTAAATAACGGGGATGTGACTTCTCTCATGGTAACTAAGCCATTGGAGTCCCTGAATATTGGAGGCTCCCCAGAAGCGAGATGTAATGAAGGAACTCCAACATCAACTCAACCTAAAACCATAATTCCTCCTTGGATGGTGACTCTTCCTACAGATGAATAG 789 0.4322 MYLFLPLSRFFLSHSSSPIELVAVRQSWRSFKNFSMGRGRVELKRIENKINRQVTFSKRRSGLIKKAREISVLCDADVALIVFSTKGKLLEYSNQPSMERILERYERHSYAEKQEGAADQPPNENWAIEHEKNFMGEELDNINLRGLQSLEQQLDSALKHIRSRKNQAMHESISELHKKDKALRERNNLLAKKIKEKEKAVVPQEQEGLLNNGDVTSLMVTKPLESLNIGGSPEARCNEGTPTSTQPKTIIPPWMVTLPTDE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00853 262 ProSitePatterns MADS-box domain signature. 38 92 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 MobiDBLite consensus disorder prediction 227 251 - -
Vian1g00853 262 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 FunFam MADS-box transcription factor MADS-MC 48 121 - -
Vian1g00853 262 Coils Coil 179 199 - -
Vian1g00853 262 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 MobiDBLite consensus disorder prediction 237 251 - -
Vian1g00853 262 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 188 - -
Vian1g00853 262 CDD MADS_MEF2_like 37 114 IPR033896 GO:0000977|GO:0045944
Vian1g00853 262 ProSiteProfiles K-box domain profile. 109 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g00853 262 Coils Coil 147 167 - -
Vian1g00853 262 SUPERFAMILY SRF-like 37 127 IPR036879 GO:0003677|GO:0046983
Vian1g00853 262 Pfam K-box region 130 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g00853 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 92 IPR002100 GO:0003677|GO:0046983
Vian1g00853 262 Gene3D - 48 120 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00853 Vian-Chr1 8892925 8898459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00853 36 198 MADS-box Gene Family AT1G26310 60.112 5.94e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian1g00853 K-box 4.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00853 K09264 K09260 gmx:100798351 345.51