Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian1g00846 | ATGGTGAGAAAGAACAGAGGTAACGTTTGGGTGTCGTTGTATCAGTATCTATATAGAAGAGTGGAAGTGAGAGAAGAAGCATTAATTGAGAGATTGAAAATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCCCAGCGTGGCGGACGAGGAAAGAGGGATGGTGGCTCGGAAGATCAAGTCTCAGACCTTGAACACGGTGACGCAGTGCCGGCGGCGAATGTGGGATTCTGTCGAGTGTTTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTGGGGATCTCCGGACTCCGGAGGAGAGAGATGAAGCTTTGGATGCTGTTAAGAGCACCATACTAGAAATCTTTCTTATCGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCCTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGAGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTTTGAGCTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCATTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCAGGGGTTACATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCGAGCCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTACGTTGAAACTGCATCCTGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACCCTGTTGATTTAGAGAATGCTTCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAGAAATATCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCCGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACTAGTGCCCTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAACACCGTTGCAGTTATATCTGATGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGGACGGTGTCTATACTGCATTAGTCAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAG | 1998 | 0.4284 | MVRKNRGNVWVSLYQYLYRRVEVREEALIERLKMNGLRSERAPLLESQRGGRGKRDGGSEDQVSDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDLRTPEERDEALDAVKSTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIRGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPEPGSKCPLGDQDGEVELDDVWFAYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDPVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVISDGQIVESGTHDELLSKDGVYTALVKRQLQTTTKVEI | 665 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian1g00846 | 665 | SUPERFAMILY | ABC transporter transmembrane region | 81 | 399 | IPR036640 | GO:0005524|GO:0016020 | |
Vian1g00846 | 665 | Gene3D | - | 416 | 660 | IPR027417 | - | |
Vian1g00846 | 665 | ProSitePatterns | ABC transporters family signature. | 558 | 572 | IPR017871 | GO:0005524|GO:0016887 | |
Vian1g00846 | 665 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 77 | 659 | IPR039421 | - | |
Vian1g00846 | 665 | CDD | ABC_6TM_AtABCB27_like | 96 | 392 | - | - | |
Vian1g00846 | 665 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 94 | 384 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian1g00846 | 665 | CDD | ABC_MTABC3_MDL1_MDL2 | 418 | 656 | - | - | |
Vian1g00846 | 665 | Pfam | ABC transporter | 436 | 586 | IPR003439 | GO:0005524 | |
Vian1g00846 | 665 | PIRSF | ABC_prm/ATPase_B | 21 | 664 | - | - | |
Vian1g00846 | 665 | MobiDBLite | consensus disorder prediction | 43 | 65 | - | - | |
Vian1g00846 | 665 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 410 | 656 | IPR027417 | - | |
Vian1g00846 | 665 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 418 | 655 | IPR003439 | GO:0005524 | |
Vian1g00846 | 665 | Pfam | ABC transporter transmembrane region | 93 | 366 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian1g00846 | 665 | SMART | AAA_5 | 445 | 639 | IPR003593 | GO:0016887 | |
Vian1g00846 | 665 | Gene3D | ABC transporter type 1, transmembrane domain | 145 | 415 | IPR036640 | GO:0005524|GO:0016020 | |
Vian1g00846 | 665 | MobiDBLite | consensus disorder prediction | 45 | 65 | - | - | |
Vian1g00846 | 665 | FunFam | ABC transporter B family member 25 | 416 | 658 | - | - | |
Vian1g00846 | 665 | FunFam | ABC transporter B family member 25 | 145 | 415 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian1g00846 | Vian-Chr1 | 8798076 | 8805401 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian1g00846 | 79 | 663 | Calmodulin-binding Proteins | AT2G36910 | 33.445 | 6.72e-92 | 308 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian1g00846 | - | - | var:108320153 | 1248.42 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian1g00846 | 1 | 8798076 | 8805401 | Vian1g00846 | 1 | 8798076 | 8805401 | ECH |