Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00846 ATGGTGAGAAAGAACAGAGGTAACGTTTGGGTGTCGTTGTATCAGTATCTATATAGAAGAGTGGAAGTGAGAGAAGAAGCATTAATTGAGAGATTGAAAATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCCCAGCGTGGCGGACGAGGAAAGAGGGATGGTGGCTCGGAAGATCAAGTCTCAGACCTTGAACACGGTGACGCAGTGCCGGCGGCGAATGTGGGATTCTGTCGAGTGTTTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTGGGGATCTCCGGACTCCGGAGGAGAGAGATGAAGCTTTGGATGCTGTTAAGAGCACCATACTAGAAATCTTTCTTATCGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCCTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGAGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTTTGAGCTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCATTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCAGGGGTTACATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCGAGCCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTACGTTGAAACTGCATCCTGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACCCTGTTGATTTAGAGAATGCTTCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAGAAATATCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCCGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACTAGTGCCCTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAACACCGTTGCAGTTATATCTGATGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGGACGGTGTCTATACTGCATTAGTCAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAG 1998 0.4284 MVRKNRGNVWVSLYQYLYRRVEVREEALIERLKMNGLRSERAPLLESQRGGRGKRDGGSEDQVSDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDLRTPEERDEALDAVKSTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIRGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPEPGSKCPLGDQDGEVELDDVWFAYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDPVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVISDGQIVESGTHDELLSKDGVYTALVKRQLQTTTKVEI 665
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00846 665 SUPERFAMILY ABC transporter transmembrane region 81 399 IPR036640 GO:0005524|GO:0016020
Vian1g00846 665 Gene3D - 416 660 IPR027417 -
Vian1g00846 665 ProSitePatterns ABC transporters family signature. 558 572 IPR017871 GO:0005524|GO:0016887
Vian1g00846 665 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 77 659 IPR039421 -
Vian1g00846 665 CDD ABC_6TM_AtABCB27_like 96 392 - -
Vian1g00846 665 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00846 665 CDD ABC_MTABC3_MDL1_MDL2 418 656 - -
Vian1g00846 665 Pfam ABC transporter 436 586 IPR003439 GO:0005524
Vian1g00846 665 PIRSF ABC_prm/ATPase_B 21 664 - -
Vian1g00846 665 MobiDBLite consensus disorder prediction 43 65 - -
Vian1g00846 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 656 IPR027417 -
Vian1g00846 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 655 IPR003439 GO:0005524
Vian1g00846 665 Pfam ABC transporter transmembrane region 93 366 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00846 665 SMART AAA_5 445 639 IPR003593 GO:0016887
Vian1g00846 665 Gene3D ABC transporter type 1, transmembrane domain 145 415 IPR036640 GO:0005524|GO:0016020
Vian1g00846 665 MobiDBLite consensus disorder prediction 45 65 - -
Vian1g00846 665 FunFam ABC transporter B family member 25 416 658 - -
Vian1g00846 665 FunFam ABC transporter B family member 25 145 415 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian1g00846 Vian-Chr1 8798076 8805401 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00846 79 663 Calmodulin-binding Proteins AT2G36910 33.445 6.72e-92 308
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00846 - - var:108320153 1248.42
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00846 1 8798076 8805401 Vian1g00846 1 8798076 8805401 ECH