Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00842 ATGATGAATGAAAGTTCAAGTAAAGTTCAGCAAGGCAATCAACAAGAGGGCGAGAACATTAAAATTGAAAAGTTGTCAAAGGCAGCCTCCACCTCAAGATCATGGTCAGCATTCAGAAACCCAAGAATTGTACGAGTGTCTCGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTGCCAACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTGAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAACTCCCACCACTTCAATTTCCTCACTGTTTTGCTCAGTTTCACCAGCAAACTCCACTGTCAGGTACCTCTCAGTTCTCTCTTGGAAGCCTGTATGATGGTGTTAATTCCTCTTTTTTAAAGGATGGGGGAAACCAAAACCTCATGACAAAGTCAACAAGGTATTGGGATTTAGATTCTCAAAACCGTACGGAGTTAGCTGAAAGTGTCTCAACCTCCCAGAAGGGCAAGTTCTGGATCAAACCAAATGAACTAGAAAATCATCAAAATGGAATTGTTGGTGTTAGTACTCGCAATAGAGAAGAATCTTCAGCTCATTGTAAGGTCTTCCCCCTTGGGACTAATAGCTCTTATTTACCTGGTTTGTCAAACAATGCCATCACACATAACTCCTACCATCATTCTGAACCTTCAACTCTATCTTTATCCCACCTTGGAAGCCATGAATTATTTCCTTCCCATCCAAGCAGTGGCAGTAGTGTGCAATTTTCATCTTCTAATTTCTGTGGAGCATCCGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCGGTGGAAAGCGATCCAAGACAATCCAACAGTGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTATTCATTCCACCACTTCACCTCTTAGACGCCTTGCAACATCTTTAAGTTCCAAGCTTTTTGATTCAGATAATAGCGATCGTAGCCAACAAGGTAAGGGCAGTACTCGTTCTTGA 1095 0.4237 MMNESSSKVQQGNQQEGENIKIEKLSKAASTSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQFHQQTPLSGTSQFSLGSLYDGVNSSFLKDGGNQNLMTKSTRYWDLDSQNRTELAESVSTSQKGKFWIKPNELENHQNGIVGVSTRNREESSAHCKVFPLGTNSSYLPGLSNNAITHNSYHHSEPSTLSLSHLGSHELFPSHPSSGSSVQFSSSNFCGASGPQLLFCPPSATPSAFYSVESDPRQSNSVQIFSSSSQVMMPHPLIQSIHSTTSPLRRLATSLSSKLFDSDNSDRSQQGKGSTRS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00842 364 MobiDBLite consensus disorder prediction 342 364 - -
Vian1g00842 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 355 IPR005333 GO:0003700
Vian1g00842 364 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g00842 364 Pfam TCP family transcription factor 52 173 IPR017887 -
Vian1g00842 364 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00842 Vian-Chr1 8749299 8750393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00842 36 195 TCP Transcription Factor Family AT5G60970 55.172 3.11e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian1g00842 TCP 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00842 - - pvu:PHAVU_003G183700g 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00842 1 8749299 8750393 Vian4g00600 4 7245567 7246688 PCT