Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00832 ATGGCTTTCTTTGGTAGACTTGGGAATTTGTTAAGACAGACCGCTAGCAGACAGGTTAGTTCAGAGTTGCGGTCGTCCCCTTCCTTATTCCAGGCCATACGCTGTCTGTCTTCTGCTCCAAGCTCCAAGCTGTTTATAGGAGGTGTTTCGTTTTCCACCGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGAAGATCCAGGGGGTTTGGATTTGTTACATACACGTCTGTTGAGGAGGCATCGAGTGCTATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGATCACGAGGTGGTGGCTATGGCGGTGGATATGGTGGCGGATTTGGCGCTGGAGGTGGTGGTGGCTATGGAGGAGGTGCATATGGTGGTGGTGGCTATGGTGGAAATGTTGCTGGTGGTTATGGTGGTGGCGGCTATGGTGGAAATACTGGAGGTGGTTATGGCGGTGGTAGCTATGGTGGAAATGCTGGTGGTGGCAGCTATGGTGCTGGTGGCTATGGGTCAGGTGGCAATTTTGGGGACAGTGGCTCTGGCAATAACTATCCTGCTGACAGCGGTGCTGGTGGCAGCTACAGTGGGAATTTTGGTGATGCTGGTGGAATAGGAAATCATGGAAGCTCTGCTGGTTTTGGCAGTAGCGGATATGATGGAAGTGCTGTGGATGGTAGCGGGGCAAGTACTGGAAACAGCTTTGCTGATGGAAGTGGAGGATTAGGCAGTGGTCAATTTGATAGCAAAGCAAGCAGCAATGGAGATGAGGATTTTGGAGATTACAGGGATGACGCTGACGATACTGATAATTTTGCCAAAAGGGCTTGA 900 0.4933 MAFFGRLGNLLRQTASRQVSSELRSSPSLFQAIRCLSSAPSSKLFIGGVSFSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQDLHGRQIRVNYANERSRGGGYGGGYGGGFGAGGGGGYGGGAYGGGGYGGNVAGGYGGGGYGGNTGGGYGGGSYGGNAGGGSYGAGGYGSGGNFGDSGSGNNYPADSGAGGSYSGNFGDAGGIGNHGSSAGFGSSGYDGSAVDGSGASTGNSFADGSGGLGSGQFDSKASSNGDEDFGDYRDDADDTDNFAKRA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00832 299 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 210 - -
Vian1g00832 299 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Vian1g00832 299 Gene3D - 12 138 IPR012677 -
Vian1g00832 299 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 143 - -
Vian1g00832 299 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vian1g00832 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Vian1g00832 299 MobiDBLite consensus disorder prediction 242 299 - -
Vian1g00832 299 MobiDBLite consensus disorder prediction 242 276 - -
Vian1g00832 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Vian1g00832 299 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00832 Vian-Chr1 8668862 8671310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00832 39 189 Eukaryotic Initiation Factors Gene Family AT2G36660 26.974 2.15e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00832 K12741 - gmx:100799124 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00832 1 8668862 8671310 Vian1g00832 1 8668862 8671310 ECH