Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00828 ATGGCGTCTTCGTCGTCGCTGGCGAAGCGATGCCATTACGAAGTGCTCGATCTCCCCCAAGACTGTGCTCCCGAGGAGATTCGCTCCTCCTACCGCCGCCTTGCCCTTCAGCGCCACCCGGACAAGCTCATAAAATCGGGTATCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTCTCCGACCCCAAGGAACGCGCTTGGTACGATTCCCACCGTTCCCAAATCCTCTTCTCCGACCCTAATTCCCTCTCCAAATCGGTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCTGACACCGGAAAGGGCTTTTATAAAGTTTATTCGGATGTTTTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGGAAAATGGGGCTCGGAGTTGAGGCTGTTCGACAGGCTCCTCTAATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGACTTTTTTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGCGAGGAAGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAAGAATATGGAGATGGAGAGGAAGAAGGAAGAAGAGAGGGAGACAAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGGCTGATTGGGCTAAGGTTGATAATGAGGAGGTAGAGGAATGGGTCGAGGAGGGGGAGGAGGAGAAGAAGAAGAATGATAAGGAGTTTTATTGTGTGTTGTGTGGAAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGCAGGATTTGGAAGAAGGAAAGGAGGGACTGGGAAGTGAGGAAGATGGGGTTGGGGTGGATGGTGATGGTGGTTATGGGGTTGGTGATTTGGAAGCGAGGATTCGGGATGATCTTAATGTTGAAGACGGGGTAATTAGAAACGGGGTTGAACCGGATGATGATGATGATGGCGGTGGTGATGAGTTTTCCGATGCTTCGCATGCGAAGGAGGGGGAAGATTCCAATGGGTTGGTTAATCTTGATGATAGTGGCAATCAAGACTGTGATAACGATGAAAATGGTGTTGTTGATGAGTTTTCCGATGCTTCGCTTGCGAAGGAGGGGGAAGATTCCAATGGGTCGGTTAATCTTGATGATAGTGGCAATCAAGACGGTGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCAGGAGCTTCAACCCACAAATCCAAGGCTTCAATAGTTCCATCTCAAATTGAAACTGAGAAGGATGAATTTGGCCCTATGGAGTACAACAACCGGAAGTCCACAAGAAAGAAACGTAGAGCTAAGAAAGAGAAGGGTAGGGAAAATTGGGAAGAATCTCAGGGGACTGCTTCCAGTTGCAATGATGAGAACATAAACGGTAATGGAAATGACAATGCTCATGGAGAGGAGTCTTCTTCCCAACATTTTACGGAAAATGGGGATAACATTATTGGGAATGAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAACCCGCTGATAAAAAGGGAGCTGGCAAGGACACAAAAATCACAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCGAAAAACATTGGTTATACTTGTGATGCGTGTGGAGAGGAGTTTGAGTCAAGAAATAAATTACACAAACATCTTGGCGATTCTGGGCATGCGACAATAATAAGAGGTCGATAA 1953 0.4757 MASSSSLAKRCHYEVLDLPQDCAPEEIRSSYRRLALQRHPDKLIKSGISQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSVVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVEAVRQAPLMGNLDSPYAQVTAFYGYWLGFCTVMDFFWVDEYDVMAGPNRKSRRLMEEENNKARKKARREYNDTVRRLGDFVKKRDKRVIDMRVKKNMEMERKKEEERETKKRLEKERKERAMAYEEADWAKVDNEEVEEWVEEGEEEKKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEQDLEEGKEGLGSEEDGVGVDGDGGYGVGDLEARIRDDLNVEDGVIRNGVEPDDDDDGGGDEFSDASHAKEGEDSNGLVNLDDSGNQDCDNDENGVVDEFSDASLAKEGEDSNGSVNLDDSGNQDGDNDENGVLEAMVAGHKNRKPGASTHKSKASIVPSQIETEKDEFGPMEYNNRKSTRKKRRAKKEKGRENWEESQGTASSCNDENINGNGNDNAHGEESSSQHFTENGDNIIGNEQVSRGNKISNQPADKKGAGKDTKITAKISSKGRKAKVTSKNIGYTCDACGEEFESRNKLHKHLGDSGHATIIRGR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00828 650 Gene3D Classic Zinc Finger 287 349 - -
Vian1g00828 650 ProSitePatterns Zinc finger C2H2 type domain signature. 621 643 IPR013087 -
Vian1g00828 650 MobiDBLite consensus disorder prediction 366 389 - -
Vian1g00828 650 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 646 IPR044648 -
Vian1g00828 650 Pfam Zinc-finger double-stranded RNA-binding 299 324 IPR022755 -
Vian1g00828 650 MobiDBLite consensus disorder prediction 311 612 - -
Vian1g00828 650 MobiDBLite consensus disorder prediction 311 351 - -
Vian1g00828 650 ProSiteProfiles Zinc finger C2H2 type domain profile. 619 644 IPR013087 -
Vian1g00828 650 CDD DnaJ 11 69 IPR001623 -
Vian1g00828 650 SMART c2h2final6 619 643 IPR013087 -
Vian1g00828 650 SMART c2h2final6 299 323 IPR013087 -
Vian1g00828 650 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 328 IPR013087 -
Vian1g00828 650 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Vian1g00828 650 Gene3D DnaJ domain 2 90 IPR036869 -
Vian1g00828 650 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vian1g00828 650 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vian1g00828 650 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vian1g00828 650 MobiDBLite consensus disorder prediction 398 413 - -
Vian1g00828 650 MobiDBLite consensus disorder prediction 533 585 - -
Vian1g00828 650 Coils Coil 238 267 - -
Vian1g00828 650 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Vian1g00828 650 MobiDBLite consensus disorder prediction 444 458 - -
Vian1g00828 650 SMART dnaj_3 10 72 IPR001623 -
Vian1g00828 650 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vian1g00828 650 Coils Coil 196 216 - -
Vian1g00828 650 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Vian1g00828 650 Pfam DnaJ domain 12 77 IPR001623 -
Vian1g00828 650 SMART ZnF_U1_5 296 330 IPR003604 GO:0003676|GO:0008270
Vian1g00828 650 MobiDBLite consensus disorder prediction 589 603 - -
Vian1g00828 650 SUPERFAMILY beta-beta-alpha zinc fingers 288 337 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00828 Vian-Chr1 8629910 8633048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00828 1 646 C2H2 Transcription Factor Family AT1G74250 49.051 8.23e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g00828 DnaJ 4.9e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00828 K09506 - gmx:100788305 847.425