Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00805 ATGAAGTTTGCGAGGCTCAAAATGTTTTCTGTCGCGGAGAACCATCTGAGTGGGACTATTCCTTTGGAAGCTTTGCCTTTGAATTGCAGCCTTGAAGAACTAGACCTTTCACAAAATGGATTTGTTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAAGCATTCTGAATCTTTCTAGTAACAAATTTACTGGGGGTATCCCTGTCGAAATAGGATCCATTTCCCGGCTCAAAGCATTGTACTTGGGGAACAACACCTTTTCAAGAGAGATTCCTGAGTCCCTTCTGAACTTGACCAATTTGACCTTCTTGGATTTGAGCAGAAACCAATTTGGTGGGGAAATACAAGAGATATTCGGGAAATTTAGGCAAGTAAGTTTTCTTCTGTTGCACTCAAATAACTATACTGGAGGGTTGAGATCCTCAGGAATTCTGACATTGCCAAACCTTTGGCGGTTAGACGTAAGCTACAACAACTTTTCAGGTCCGTTACCAGTTGAGATCTCTCAAATGTCAAGTCTGAAGTTTCTAATGTTATGCTACAACCAGTTCAATGGATCAATTCCACCAGAATTTGGAAACATGACTCAACTGCAAGCGCTTGACCTTGCCTTCAACAATTTGAGTGGGTCTATACCACCAACCCTCGGAAAGTTAAACTCCCTCTTATGGTTGATGCTAGCAAACAATTCTTTAACTGGAGAAATCCCTCCAGAGTTGGGAAACTGTTCAAGCTTATTATGGCTAAACCTTGCCAACAATAAGCTCTCTGGAAAATTGCCCTCTGAACTGTCCAAAATTGGAAGGAATGCCACGACCACATTTGAATACAATAGGCGAAACTATAGAATGGTTGCTGGATCTGGTGAATGTTTGGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGACCTCTTAACAAGGAAAAAATGTAGAGAACTTTGGGACAAATTGATCAAAGGGTACGGTGTTTTCCCGTTTTGCACACCTGGTAATTCCTCTCGCGTAACACAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCAGTGGTGAAATTCCTCCAGAGATTGGGTCAATGGTCAACTTCAGCATGATGCACTTGGGGCTCAACAATCTCTCTGGGAAGTTACCTCGAGAGATGGGAAGTGTATCCCTGGTGGTATTAAACATCACAAGAAACGAGTTTTCAGGCGAAATTCCCCAAGAAATTGGCAACATGAAATGTCTGATGAATCTGGATCTGTCGTACAACAATTTCTCGGGAATGTTTCCAACGAATTTGCACAAATTGACAGAGCTTAGCAAGTTCAACATCTCATACAATCCCTTCATATCAGGTGAGGTCCCATCAAACGGACAGTTCGCAACCTTTTTAGAAGATTCATATTTAGGTAACCCCCATTTGATCCTACCCCGGTTTCTTCAGAACACTAGCAATGACAGAAACACCACCTCTCAGAAAGACCATAAAAAGTCCTCAAGACTACCTTTGGTTTTGGTGTTTGCGGTCATAACACTGGTTTTCATAGTATGCGGACTTCTCACTATATTAGTCTGCGTATCGGTGAAAGGCCCTTCAGAGGAACCAAGATACCTCTTGAGGGACACAAAACAGTGGCATGATTCCAGCAGCTCCGGATCCTCATCATGGATGTCCGACACAGTGAAGGTCATCCGTTTGAACAAGACAGTTTTCACACATGCCGACATTCTGAAAGCAACTGGCAGCTTCTCCGAGGACAGGATCATAGGAAAAGGAGGGTTTGGAACAGTGTACAAGGGAGTGTTTTCAGACGGTAGACAAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGCCTGGAGGGTGAGAAGGAATTCAAAGCTGAAATGGAGGTTCTGAGTGGTCATGGCTTTGGTTGGCCTCATCCAAACCTGGTCACACTCTACGGCTGGTGCCTAAACGAGTCAGAAAAGATACTAATTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATGTAGTGATGGACAGAACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAATCGATGTGGCACGTGCACTAGTGTATCTACACCACGAGTGCTACCCTTCTGTTGTGCACAGAGATGTGAAGGCCAGCAATGTGTTACTAGATAAAGATGGGAAGGCGAAGGTAACTGATTTTGGGCTTGCCAGAGTGGTTGATGTTGGGGATAGCCATGTGAGCACTATGGTGGCTGGGACAGTGGGGTACGTTGCACCTGAATATGGACACACATGGCAGGCTACTACAAAGGGGGATGTGTACAGTTTTGGGGTTTTGATCATGGAGCTTGCAGCAGCAAGAAGAGCAGTGGATGGAGGGGAAGAGTGCTTGGTGGAATGGGCGAGGCGTGTTATGGGTTATGGACGACACCATCATCGTCATCATCACGGCTTGAGTCGGTCTGTGCCAGTTCTGCTGATGGGTTCTGGGCTTGTCGGTGGGGCTGAGGAGATGACTGAGTTACTGAGGATTGGAGTGATGTGCACAGCTGATGCACCACAGGCCAGACCGAACATGAAAGAGGTTCTTGCTATGCTGATTAAGATATTTAACCTCAAGGACCACTCCACTTATGGATACATTGTTTAG 2646 0.4512 MKFARLKMFSVAENHLSGTIPLEALPLNCSLEELDLSQNGFVGEAPKGVANCKNLSILNLSSNKFTGGIPVEIGSISRLKALYLGNNTFSREIPESLLNLTNLTFLDLSRNQFGGEIQEIFGKFRQVSFLLLHSNNYTGGLRSSGILTLPNLWRLDVSYNNFSGPLPVEISQMSSLKFLMLCYNQFNGSIPPEFGNMTQLQALDLAFNNLSGSIPPTLGKLNSLLWLMLANNSLTGEIPPELGNCSSLLWLNLANNKLSGKLPSELSKIGRNATTTFEYNRRNYRMVAGSGECLAMKRWIPADYPPFSFVYDLLTRKKCRELWDKLIKGYGVFPFCTPGNSSRVTQISGYIQLSSNQLSGEIPPEIGSMVNFSMMHLGLNNLSGKLPREMGSVSLVVLNITRNEFSGEIPQEIGNMKCLMNLDLSYNNFSGMFPTNLHKLTELSKFNISYNPFISGEVPSNGQFATFLEDSYLGNPHLILPRFLQNTSNDRNTTSQKDHKKSSRLPLVLVFAVITLVFIVCGLLTILVCVSVKGPSEEPRYLLRDTKQWHDSSSSGSSSWMSDTVKVIRLNKTVFTHADILKATGSFSEDRIIGKGGFGTVYKGVFSDGRQVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNESEKILIYEYIEGGSLEDVVMDRTRLTWRRRLEVAIDVARALVYLHHECYPSVVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLIMELAAARRAVDGGEECLVEWARRVMGYGRHHHRHHHGLSRSVPVLLMGSGLVGGAEEMTELLRIGVMCTADAPQARPNMKEVLAMLIKIFNLKDHSTYGYIV 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00805 881 SMART LRR_typ_2 197 220 IPR003591 -
Vian1g00805 881 SMART LRR_typ_2 149 173 IPR003591 -
Vian1g00805 881 SMART LRR_typ_2 221 245 IPR003591 -
Vian1g00805 881 SMART LRR_typ_2 100 123 IPR003591 -
Vian1g00805 881 SUPERFAMILY L domain-like 350 475 - -
Vian1g00805 881 SMART serkin_6 587 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00805 881 FunFam Suppressor of npr1-1 constitutive 4 556 666 - -
Vian1g00805 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Vian1g00805 881 ProSitePatterns Protein kinases ATP-binding region signature. 593 616 IPR017441 GO:0005524
Vian1g00805 881 Gene3D Ribonuclease Inhibitor 143 286 IPR032675 -
Vian1g00805 881 SUPERFAMILY Protein kinase-like (PK-like) 568 866 IPR011009 -
Vian1g00805 881 Gene3D Ribonuclease Inhibitor 348 496 IPR032675 -
Vian1g00805 881 Gene3D Phosphorylase Kinase; domain 1 550 666 - -
Vian1g00805 881 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 285 - -
Vian1g00805 881 Pfam Protein kinase domain 588 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00805 881 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 667 873 - -
Vian1g00805 881 Gene3D Transferase(Phosphotransferase) domain 1 667 877 - -
Vian1g00805 881 SUPERFAMILY L domain-like 19 280 - -
Vian1g00805 881 ProSiteProfiles Protein kinase domain profile. 587 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00805 881 PANTHER LEUCINE RICH REPEAT KINASE 2 146 868 - -
Vian1g00805 881 Gene3D Ribonuclease Inhibitor 1 142 IPR032675 -
Vian1g00805 881 Pfam Leucine Rich repeat 100 116 IPR001611 GO:0005515
Vian1g00805 881 CDD STKc_IRAK 593 868 - -
Vian1g00805 881 FunFam Inactive leucine-rich repeat receptor-like protein kinase 22 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00805 Vian-Chr1 8409868 8412513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00805 2 868 Receptor kinase-like Gene Family AT4G39400 33.782 7.68e-138 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vian1g00805 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00805 - - vum:124845100 1731.84