Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00802 ATGTCGGACGAAGAGCACCATTTCGAGTCCAAGGCTGATGCCGGAGCATCCAAAACCTACCCTCAGCAAGCCGGTACCATTCGTAAGAATGGTTACATAGTCATCAAAAGCCGTCCCTGCAAGGTTGTGGAAGTTTCCACTTCCAAAACTGGAAAGCATGGTCACGCCAAGTGTCATTTTGTTGGAATTGATATTTTCACTGGCAAGAAACTTGAGGATATTGTGCCCTCCTCTCACAACTGTGATGTTCCTCATGTGAATCGTACTGACTATCAGCTCATTGATATTTCTGAGGATGGATTTGTGAGTCTGCTTACTGAAAACGGGAACACTAAGGATGACCTCAGGCTCCCTACTGATGACAGTCTTCTGACTCAGGTTGGCTCAAATTTGGAGATTTTCCCCTTTTTGATAAAGGATGGATTTGCTGAGGGCAAGGACCTTGTTGTGTCTGTGATGTCTGCTATGGGGGAGGAACAGATTTGTGCTTTGAAGGACATTGGGCCGAAGAATTAG 516 0.4574 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDSLLTQVGSNLEIFPFLIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00802 171 PIRSF Transl_init_eIF5A 1 168 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian1g00802 171 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian1g00802 171 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Vian1g00802 171 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 168 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian1g00802 171 FunFam Eukaryotic translation initiation factor 5A 86 169 - -
Vian1g00802 171 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g00802 171 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Vian1g00802 171 SMART eIF_5a_2 85 165 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian1g00802 171 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 165 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian1g00802 171 Gene3D - 1 85 IPR014722 -
Vian1g00802 171 NCBIfam translation initiation factor IF-5A 17 164 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian1g00802 171 Gene3D - 86 170 IPR012340 -
Vian1g00802 171 SUPERFAMILY Nucleic acid-binding proteins 86 167 IPR012340 -
Vian1g00802 171 CDD S1_eIF5A 86 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00802 Vian-Chr1 8380406 8381392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00802 1 170 Eukaryotic Initiation Factors Gene Family AT1G13950 84.118 7.29e-101 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00802 K03263 K02180 ming:122084193 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00802 1 8380406 8381392 Vian1g00802 1 8380406 8381392 ECH