Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00800 ATGGGGTGTGTGGTGGCGAAGCAGGCTGTTTCTGTCACACCCGCGATTGAGCACTCGGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCTAGTAGGAGCGAGTTGGGCGAGTCAGGGAGAGCGAGTTCCAATGCTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGTAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCAGGTTGGCCAGCGTGGCTCAGCGCCGTCGCAAGTGAGGCCATTCACGGTTGGGTTCCTCTTCGAGCTGACGCATATGAGAAACTTGAAAAGATTGGTCAGGGAACATATAGCAGTGTTTTCCGAGCAAAGGAGATTGAGACCGGAAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCGGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCACTCACGGGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTAGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGACTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTAGTCACGTTATGGTATCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCCGTGGATATTTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACCGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGAAGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAACAACCATACGATAGTTGCCTCCGACAGACATTTAAAGATTTTCACGTATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTCGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGCGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAAGAGGAGTCAAGAAGGAAAAAAATTGGTGGGCGAGCTGGTGTACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCAGCAGAGGATTTGACAACTCAAACTCAAACTTCCCAAAAGAATGATGATAGATGTATCCACACCCTTAAAGAAGAGAACACTCATGCAGGTGAGGGGGCACCAAAGCAGTCTGGTGGTAAACCAGACGATGATTCCCATGTGAAGAAGGCATCTCAAGTAGATATTCCCTTTCCTGGGCCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAGAGATGACGCTTCAATTAGAACTCACAGTCGTTCTATTTCTAGAGGGTATATCTTTAATTCATTGGAAACTTCACTAAATTCAAGGAATAATTCTGAATCCAGAAACTACGAAAATAATGAATTTTTCGGGACATGCACCAACTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGAAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTTTCCATGGCGCTTTATAACAGGCAAGACTCATTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTGTTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGCCGGTTTTGGTGGAGAGGATCATGAACTTCAGCCCCATGAGATCCGTTGGGCTAAAGCTCGTCAGAACGGGAACGCCCTTCTCTGCCATCAGTGTGGCCAGACCAATCTGATGGTCGACCAGAGGGTCTCTTGGCACCCACTCACCAACACGCGCCACCCCAGCTCCCTCACCCTCTCCAAAATCACGCTGCCATCGCCACCACCAGGATTGCAATACTCGTGCTCGCGGTCAACCCCAACGGGCAACGACAGCTCCCACAGCACGTCACACACGTGCGGCGCCAAAACCGGATCCTCCGCAAGCCTCACCTCAAAAAGACTCCGAAAAACGGAAATGGTGTGA 2319 0.4644 MGCVVAKQAVSVTPAIEHSVESDKNRKKKTESSRSELGESGRASSNAGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRADAYEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRQTFKDFHVSSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRAGVPESRKPSRKPLALSKLAPAEDLTTQTQTSQKNDDRCIHTLKEENTHAGEGAPKQSGGKPDDDSHVKKASQVDIPFPGPLQVSKSSGFAWAKRRRDDASIRTHSRSISRGYIFNSLETSLNSRNNSESRNYENNEFFGTCTNSRGHDLLEISKLAMKNQWSKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRAGFGGEDHELQPHEIRWAKARQNGNALLCHQCGQTNLMVDQRVSWHPLTNTRHPSSLTLSKITLPSPPPGLQYSCSRSTPTGNDSSHSTSHTCGAKTGSSASLTSKRLRKTEMV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00800 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vian1g00800 772 FunFam probable serine/threonine-protein kinase At1g54610 82 177 - -
Vian1g00800 772 ProSiteProfiles Protein kinase domain profile. 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00800 772 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Vian1g00800 772 MobiDBLite consensus disorder prediction 390 496 - -
Vian1g00800 772 Pfam Protein kinase domain 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00800 772 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00800 772 SUPERFAMILY Protein kinase-like (PK-like) 88 386 IPR011009 -
Vian1g00800 772 MobiDBLite consensus disorder prediction 398 423 - -
Vian1g00800 772 MobiDBLite consensus disorder prediction 453 467 - -
Vian1g00800 772 PANTHER CELL DIVISION PROTEIN KINASE 93 383 - -
Vian1g00800 772 MobiDBLite consensus disorder prediction 710 765 - -
Vian1g00800 772 Gene3D Transferase(Phosphotransferase) domain 1 178 418 - -
Vian1g00800 772 MobiDBLite consensus disorder prediction 438 452 - -
Vian1g00800 772 MobiDBLite consensus disorder prediction 15 50 - -
Vian1g00800 772 MobiDBLite consensus disorder prediction 19 36 - -
Vian1g00800 772 CDD STKc_CDK9_like 95 379 - -
Vian1g00800 772 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Vian1g00800 772 MobiDBLite consensus disorder prediction 710 772 - -
Vian1g00800 772 FunFam probable serine/threonine-protein kinase At1g54610 178 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00800 Vian-Chr1 8352997 8360336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00800 87 439 Core Cell Cycle Gene Families AT5G10270 49.051 9.01e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian1g00800 Pkinase 2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00800 - - gmx:100784406 1159.44