Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00798 ATGCTCGTGAAAATTGACTTGCGTTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCATGAGGAATTGATGTTTAGAGTTATGTTTCATACTGCATTTGTGCGGTCAAATATTTTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGAGGCGAAGGACCTATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGATTGAGAGTGCTGAGACAGAAAGTGCTTCACCTGATGAGTTCTATGAAGTAGAAGAAATCTTCAGCAGTGTAATTGATGCACAAGAAGGTAAGACAGAGTATGATTCTCAGGCTTTCCATGAAAATGCTGTGAATGATGAAACTCATAAGGGGGTCTGGAGGCAGAAGTCTGATCCTCATAGTTTTGAGGATTGTCCACCAGATGACAAGATCGCCAAGCAGGTTTACAAGATGGATCCTGGTATTAATACTGTGAAAGACATCTCTATTGATGATGCTCACTATAAATTTGATGGGAGCATAGATTCAGATCCTCATGCAGTGAAGGACATTGCTGTCGATGATGGAGAAATTAAGTCAACTTCCATTGCAGTTATTTCTGATATGATGAAACCTCCTCTGGAAACAAAGGAAGTTACCATGCATGTGCAGCAGGAATTTGCAGTCATTGAAAATGAATATGATGAAGATAAGGAGGTAACAGAAAAGGAGCTAGACTCCAAGGCTGGGAACCAGATGCCTGATTTGACTGAACAAAAATCTGGTAAAGTACTTCCATCTACTGCCAAGAAACAACCTCCATCCAACTCGAAGCCAGTTGGAGATACAGTTGCAGCAAAGCAAAAGATTAAACAGCAAGAAACCCATGGTTTTCAGGCAAAACAAGCTAAGCCAAATGCCGTAACTAGATGGATTCCTTCTAACAAGGGTTCTTATACAAATTCAATGCACGTCTATTATCCGCCATCAAGGAATAACAGTGCACCAGCTGCACTGACAAATTTGTCTTCCACAAAAGAGAAAATTGAAGATTCCAAAACAAGATCTTTATCTGCTCCTGTTGTTTCTGCAGTTGTTGCTTTTATTGACAAAACAAATGACTTAAAAAGCCGGAAGGTGGTCACTTCAAAATCTTCTGGCTATATAGCAACAGAAATAGATGAAAAAGGTCTACCATCACCATTGTCATCAATTAAAGAGACATCTTTTCAGTCAGATACTCCAGCGCAAGAACAGAGCTCAGAACAACTGCTACAGCCTCCCCCACCACCTCCCCCTCCCCCTCCTGCTCACAGTAGAGTCTCTTCTCTAGTTTTTGAATCCTCATCATTAAAGGATGATGTATCAGCTCAAGGCTCTCCATCTTCTTTGGGTGGAGAAGGGTCCCTCATGCCACCACCACCACCTCCTCCACCTCCTCCACCGCCATCATTTCAACCTTCAACTTTAACAACATTTATGAGACCACCTGAAACTTCTCTTCCTTTCCCTCCACCCCCACCACCACCCCCGCCCCCTTTTTTTGGGCAAAATGTAGGGAGCTTAGTACCTTTTCCATCCCCTAGGAAATCTGTGGCTTCATCAATGGTTGGAGAGACTAGTGTATCTTTAACACTTTCTACAACCCCTCTTCCATTTACAAGCACTGTCGTTACACTGGATGTTTCTCAAGTGGGTACTGCAGTGATCCCTTCACAGCCTCCTCCACCGCCACCACCTCCAAGGTATGAAGTTTCATCTGTTCCTCCTTTGACACCACTAGCATCACCTCTTCCAAAGAATAAAATTCCATCAGTTCCCCCTCCTCCCATGTTTCCTACAGCTTCAACAAATAGGGCTCCACCCCCTCCTCCCCCAACACCCCCATTTGCATCACATAAAGGTTCACCTCCACCAGCAACCCCACCTCCAACTCAACCCCTGTCTCCGCCTCCCCCTCCCCCTCCGCCTCCTCCTCCCCCTCCCCTAGCCAATTCACATATATATTCAGCTACACCACCTATAGCTAATTCACATGTATATTCAACTACACTACCTATACCTCCGCCACCACCTCCTCCTCCTTTTGGTAAAGCTTCATTACCTCCCTCTCCACCTCCTTTCAATAGTCCTCTTCCACCACCACCACCGCCACCACCACCACCTCCACCCACACCTCCTTCCCCACCTCTTCCTCTATCAAGTGTGGCCTCTCCTCCACCTCCTCCAATGTATAAAGCCGCACCTCCCACACCACCACCTCTTCCTCCATCAAATGGAGCCCCACCTCCACCTCCACCACCACCTCTTCCTCCATCAAGTGGAGCCCCACCACCCCCTCCACCTCCAATGTACGGAGTACCACCTCCACCACCACCTCCATCAATGTATGGAACACCACCTCCTCCTCTAGGCGGTCAAGGACCACCTCCTCCTCCAGGCGGTCGAGGACCACCTCCTCCACCTCCTCCTCCAATGTATGGAACACCACCTCCTCCACCCCCTCCATCGTATGGAGCACCACCTCCACCACCACCTCCTGGTGGTCGAGGACCACCACCTCCTCCTCCCCCAATGTTTGGAGCACCACCTCCACCTCCTGGTGGTAGAGGACCACCTCCTCCTCCTCCCCCAATGTTTGGAGCACCACCTCCACCTCCTGGTGGTAGAGGACCACCTCCTCCACCTCCTCCTGGTGGTCGAGGTCCTCCTCCTCCACCTCCCCCAGGTGTTCCTGGTGCTCCTACACCTCCTGGGGGTGGACCTCCGCCACCTCCGCCCTTTGGTGCAAAAGGTGCAAATGTTGGAGTTGATCCAAGAGGGAGAGGACGTGGGTATGCGCGCCCTACAGGGGCTGCACCCCGTAAATCCTCTTTAAAGCCTTTACATTGGAGCAAGGTTACAAGGGCACTACAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCACAAATTGCACCAGAGTTCGATTTTTCAGAGCTAGAGAAGCTTTTCTCCTTAAATGTTCCAAAACCTGCTGATGCTGGTGGAAAATCTGGAGGGAAGGGCAAGTCTGCTGGATCTAAAACTGACAGAGTCACCTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCCGATATGATGGCTGCAGTACTGGCTTTGGACGAGTCAGTATTAGATGTTGATCAAGTGGAAAATCTTATTAAGTTTTGTCCTACAAAAGAGGAGATGGATCTTATAAAGGCATACACCGGTGACAAGGAACTTTTGGGGAAGTGTGAACAGTTTTTTATAGAGTTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTGCGTTCAAGATTCAGTTTGGCGCCCAGCTTACGGAGTTTAAGAAGAGTTTAAACACTGTTAACTCTGCCTGTGAAGAGGTCCGACATTCTGCTAAACTGAAGGAGATAATGAAGAAAATACTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCAGTTGGATTCAAGTTAGATAGCCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAGAATGACACTCATGCATTATCTCTGCAAGGTCATAGCTGAAAAGTCACCCAAACTCCTTGATTTCCACCTAGACCTTGTTAGCCTGGAAGATTCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGACTAGAAAAAGTTAAACAAGAATTTGCTGCATCTGCGAATGATGGACCTGTTTCTGCAGTTTTCCATGAGAAATTGAAAGAATTTATTGGTGTATCTGAGTCAGAGGTGGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAATGCTGATGCACTTGCCCTATATTTTGGTGAGGATCCTGCTCGTTGCCCTTTTGAGCAAGGTAAGTTGGTGCATGGTTATGTTGTTGTTACTACAACCCTGCTAAATTTTATAAGGTTGTTTCGGAAAGCACATGAAGAAAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAGGAGGCTGAAATGGAAAAGGCTAAGGGCGTTAACTTGACAAAAAAGGGTGCAAAAGATAGTTGA 4167 0.462 MLVKIDLRCRVQGDVVLECIHLSDDFVHEELMFRVMFHTAFVRSNILMLSRDEIDILWEAKDLFPKDFKAEVLFLDADAVIPDLTTVTVSEDANEIESAETESASPDEFYEVEEIFSSVIDAQEGKTEYDSQAFHENAVNDETHKGVWRQKSDPHSFEDCPPDDKIAKQVYKMDPGINTVKDISIDDAHYKFDGSIDSDPHAVKDIAVDDGEIKSTSIAVISDMMKPPLETKEVTMHVQQEFAVIENEYDEDKEVTEKELDSKAGNQMPDLTEQKSGKVLPSTAKKQPPSNSKPVGDTVAAKQKIKQQETHGFQAKQAKPNAVTRWIPSNKGSYTNSMHVYYPPSRNNSAPAALTNLSSTKEKIEDSKTRSLSAPVVSAVVAFIDKTNDLKSRKVVTSKSSGYIATEIDEKGLPSPLSSIKETSFQSDTPAQEQSSEQLLQPPPPPPPPPPAHSRVSSLVFESSSLKDDVSAQGSPSSLGGEGSLMPPPPPPPPPPPPSFQPSTLTTFMRPPETSLPFPPPPPPPPPPFFGQNVGSLVPFPSPRKSVASSMVGETSVSLTLSTTPLPFTSTVVTLDVSQVGTAVIPSQPPPPPPPPRYEVSSVPPLTPLASPLPKNKIPSVPPPPMFPTASTNRAPPPPPPTPPFASHKGSPPPATPPPTQPLSPPPPPPPPPPPPPLANSHIYSATPPIANSHVYSTTLPIPPPPPPPPFGKASLPPSPPPFNSPLPPPPPPPPPPPPTPPSPPLPLSSVASPPPPPMYKAAPPTPPPLPPSNGAPPPPPPPPLPPSSGAPPPPPPPMYGVPPPPPPPSMYGTPPPPLGGQGPPPPPGGRGPPPPPPPPMYGTPPPPPPPSYGAPPPPPPPGGRGPPPPPPPMFGAPPPPPGGRGPPPPPPPMFGAPPPPPGGRGPPPPPPPGGRGPPPPPPPGVPGAPTPPGGGPPPPPPFGAKGANVGVDPRGRGRGYARPTGAAPRKSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDFSELEKLFSLNVPKPADAGGKSGGKGKSAGSKTDRVTLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMDLIKAYTGDKELLGKCEQFFIELMKVPRVESKLRVFAFKIQFGAQLTEFKKSLNTVNSACEEVRHSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSRMTLMHYLCKVIAEKSPKLLDFHLDLVSLEDSTKIQLKSLAEEMQAIIKGLEKVKQEFAASANDGPVSAVFHEKLKEFIGVSESEVASLTNLYSVVGRNADALALYFGEDPARCPFEQGKLVHGYVVVTTTLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKGAKDS 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00798 1388 Gene3D - 1 79 - -
Vian1g00798 1388 Pfam C2 domain of PTEN tumour-suppressor protein 1 74 IPR014020 -
Vian1g00798 1388 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1042 1376 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 548 565 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 483 502 - -
Vian1g00798 1388 Coils Coil 1246 1266 - -
Vian1g00798 1388 ProSiteProfiles Formin homology-2 (FH2) domain profile. 964 1374 IPR015425 -
Vian1g00798 1388 SMART it6_source 439 1388 IPR015425 -
Vian1g00798 1388 ProSiteProfiles C2 tensin-type domain profile. 1 77 IPR014020 -
Vian1g00798 1388 Pfam Formin Homology 2 Domain 969 1327 IPR015425 -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 1365 1388 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 267 300 - -
Vian1g00798 1388 Coils Coil 1349 1383 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 585 682 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 513 532 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 250 300 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 457 480 - -
Vian1g00798 1388 SMART PTEN_C2_2 3 76 IPR014020 -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 250 264 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 699 945 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 583 976 - -
Vian1g00798 1388 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 74 IPR035892 -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 1020 1041 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 439 454 - -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 417 438 - -
Vian1g00798 1388 PANTHER FORMIN-J 1 1380 - -
Vian1g00798 1388 Gene3D Formin, FH2 domain 962 1360 IPR042201 -
Vian1g00798 1388 MobiDBLite consensus disorder prediction 412 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00798 Vian-Chr1 8310343 8331869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00798 943 1388 FH2 protein (formin) Gene Family AT5G07740 75.556 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00798 - - vun:114178199 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00798 1 8310343 8331869 Vian1g00798 1 8310343 8331869 ECH