Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00792 ATGGATGCCGATACTGAGACTGAGGAACTTATTAATTTGAACAATAAAGCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGAGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACACTTCTTTTGCGGTGTTCTTATCAGGTTACTTCAGTAAAATCGGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCGGTGAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGGGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACCGTAGTATCAATCCAACAAGAAGAAGAGGTTAATATTGCCACCGCCACCAATGTTGTGGTGGAGCTTCCCAGTGCTCTTGTCTCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGCAGAACAGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAGCACTGAAGAGCAACATTGAAGAGACTGCTCATGTTGACAATACTACTACAGAAGTTAGGGTGAAACATGTGAATCAAGCATGTGGTGAACAGGATGGTAGTGACCTTAATACACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACCCAGCAGCAACAGTATCCATGATTCTTTTTCTATTGAGAGATCTTGTACTCCACCTGCATCTGTGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACGTTCTCGGGGAGTAATGCATCCAATAAATGGAAGTCACGGTTCCGATCCTGCTCAACATGCTTATCCATATTGCATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTGCAAAGTCATTCCGGTTCTTCCGTGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCAAGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCGTTAGGAAGTTCAAGTTCATGTGAAGTGAAATCAAGCAAGGTTGATAGGAGAGAAGCAGCACTGATGAAGTTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTGAGAAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAACCTACTTCCACTGATTATGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTCTCTCCTGAGGATGCTTGA 1671 0.4147 MDADTETEELINLNNKASNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFELVASDPSDANTNSTTLFSDDTDDKSKRSTNPETVVSIQQEEEVNIATATNVVVELPSALVSEYQPDVPGISDRRTGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEETAHVDNTTTEVRVKHVNQACGEQDGSDLNTHENGEMFENHSQDDLPSSNSIHDSFSIERSCTPPASVEVSQQKHYREERSRGVMHPINGSHGSDPAQHAYPYCISGVVNHVMMPSSAQMYQKNIQDLQSHSGSSVIAQYNHLPQCPPQASGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKSSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVDVDLNGQPTSTDYDEEEEDNHVARDFSPEDA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00792 556 Gene3D - 37 233 - -
Vian1g00792 556 MobiDBLite consensus disorder prediction 526 556 - -
Vian1g00792 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 244 IPR045279 GO:0009736
Vian1g00792 556 SMART REC_2 37 152 IPR001789 GO:0000160
Vian1g00792 556 Pfam CCT motif 479 521 IPR010402 GO:0005515
Vian1g00792 556 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Vian1g00792 556 MobiDBLite consensus disorder prediction 306 358 - -
Vian1g00792 556 MobiDBLite consensus disorder prediction 185 206 - -
Vian1g00792 556 MobiDBLite consensus disorder prediction 241 260 - -
Vian1g00792 556 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Vian1g00792 556 SUPERFAMILY CheY-like 35 163 IPR011006 -
Vian1g00792 556 MobiDBLite consensus disorder prediction 325 354 - -
Vian1g00792 556 ProSiteProfiles CCT domain profile. 479 521 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00792 Vian-Chr1 8275895 8280441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00792 26 555 Response Regulator Gene Family AT5G61380 49.123 1.58e-174 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vian1g00792 Response_reg 1.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00792 K12127 - gmx:100786522 964.526