Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00789 ATGGAAACTGAAATAATCCAGGGACCTTGGGGATTTCGCTCTCTACCCAAATTCATATTGTGCACCATTTCTGGGGCCCTCACCGTGTGTTTTGCCATTGCTGGTGCCATGACAGGAGCTATAGCCGGTGCTTTAGCAGCTAAGGCTACAAGGAGCGGTCTTCTCCGGGGAGTTTCTTTGGGTGCCATTGCCGGGTCTATACTCTCAGTGGAGGTGTTGGAAGCTTCCCGTGCATACTGGTGTATGGAACAAACTGGCTCACGGGGAGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGGGGGAGGCTTGTTGAGGAATCCCTTACACCAGCCATTTTAACTGCCTACAACTTGCAGTTTGAGCAGGTTGGCATTGCTAATGCAGGCTATGATGAGATTCATGATGTTCATGGCTTGGTGGCACCGAGAGGATTGTCAGGAGATTCGCTCAAGAGGTTACCACACCATATGATCTCAAAGGATATGAAGGCAGAAAATACTTGTACAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCCTGTCCTGTCTGTAGGCAGAATGTGTAA 648 0.4707 METEIIQGPWGFRSLPKFILCTISGALTVCFAIAGAMTGAIAGALAAKATRSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANAGYDEIHDVHGLVAPRGLSGDSLKRLPHHMISKDMKAENTCTICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00789 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 214 IPR044523 -
Vian1g00789 215 SUPERFAMILY RING/U-box 157 215 - -
Vian1g00789 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 215 IPR013083 -
Vian1g00789 215 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Vian1g00789 215 Pfam Ring finger domain 168 212 IPR001841 -
Vian1g00789 215 SMART ring_2 170 211 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00789 Vian-Chr1 8247034 8250193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00789 14 215 C3H Transcription Factor Family AT1G74410 55.882 1.82e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00789 - - gmx:100800105 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00789 1 8247034 8250193 Vian1g00789 1 8247034 8250193 ECH