Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00785 ATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTGTGCGACATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGCTATTCAAATTATATTGGGAGCAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTGACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGCTAAATGGAACTACATATTTAAATGTACAACGTTGTGACCAATTTACGTTCCCTCCACAAGATATTGAGGAAGCAAAACATTTACCTACATTGAACAATAAATCAAACACCGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTTGAAAATGAACATCAATTTTGGAATTCTGCTTCGGGGTCTTGTGGTATTGCCATGTATAATGAGAATGGCTATCACAGGCCTTTTTGGAGTGACAAGTTATTAGCGGATAAAATGATGACAAAATGGTTGCAAATTATGTCTACAAAAACCATATTAGATTGTCTCTCCACCTATGAGGTCAACGTGGTTGTTTATCAGTGGTATGATGTGTCTATGGGTCAGTCCGTGGTTGAAGCTCAATTGTCCGACATCAATCCAACAATTTATCTGACAGTCCGTCCAACAACTAAACTATCAGACATGAACCTGCTTCAGTACGACTAG 813 0.3862 MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFAQLSPQERAKSYSNYIGSNKLEVGSSPQVTLGQGGGAMNELNGTTYLNVQRCDQFTFPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENEHQFWNSASGSCGIAMYNENGYHRPFWSDKLLADKMMTKWLQIMSTKTILDCLSTYEVNVVVYQWYDVSMGQSVVEAQLSDINPTIYLTVRPTTKLSDMNLLQYD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00785 270 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Vian1g00785 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Vian1g00785 270 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vian1g00785 270 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vian1g00785 270 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Vian1g00785 270 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g00785 270 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Vian1g00785 270 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g00785 270 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g00785 270 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00785 Vian-Chr1 8190439 8209630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00785 1 81 Type I MADS-box Gene Family AT2G03060 70.370 3.37e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g00785 SRF-TF 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00785 - - pvu:PHAVU_003G189100g 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00785 1 8190439 8209630 Vian1g00785 1 8190439 8209630 ECH