Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00772 ATGAACATGGGGAGGCCACCTTGTTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAGGAAGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACTAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGCAATTTCACCGAGCATGAGGAGAAGATCATAATCCACCTTCAAGCTCTTTTGGGCAACAGATGGGCTGCCATAGCTTCGTATCTTCCAGAAAGGACAGACAATGACATAAAAAATTATTGGAATACCCATATGAAGAAGAAGATGAAACCAAGTGATCAAAACGAAGAGCAAGAGGGACATTCTTCTTCTTCTTCTTCACATCCAAAGGGTCAGTGGGAGAGAAGATTACAAACAGATATACAAACAGCCAAACAAGCCCTGTGCGATGCTTTGTCCCTTCACACGACACCAGCAACACATGCTGTGCCTGAGACCAAGCCTTCTTCAACTTCTCATCAACCCTACAGCCACGCCTCATCTTCATATGCATCTAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAAACTCCAAACTCACTAGGGGATTATTCCTTCAATAACATGGTCAATATTAATACACCAAGATCCAGTTCTAGTGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATCATGTTTTTGACTTGTTCAACTTCAACTCCTCCACAAACTATGGTTCTGCCTCTCAGACTCAAGTGCCTCTTACCATGATAGAGAATTGGCTTTTCGAGGATGGGGCTTTTCAGTCTCATGAAGATCTGATGAGCATGTCGCTGGAAGAAAGTACTTCAGGTTTGTGTTAG 909 0.4323 MNMGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHMKKKMKPSDQNEEQEGHSSSSSSHPKGQWERRLQTDIQTAKQALCDALSLHTTPATHAVPETKPSSTSHQPYSHASSSYASSYENISRLMENWMKTPNSLGDYSFNNMVNINTPRSSSSEGAHSTTNTTCAQDHVFDLFNFNSSTNYGSASQTQVPLTMIENWLFEDGAFQSHEDLMSMSLEESTSGLC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00772 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 236 - -
Vian1g00772 302 MobiDBLite consensus disorder prediction 127 144 - -
Vian1g00772 302 MobiDBLite consensus disorder prediction 170 189 - -
Vian1g00772 302 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vian1g00772 302 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Vian1g00772 302 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vian1g00772 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vian1g00772 302 MobiDBLite consensus disorder prediction 116 144 - -
Vian1g00772 302 Gene3D - 70 147 - -
Vian1g00772 302 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vian1g00772 302 SMART sant 68 116 IPR001005 -
Vian1g00772 302 SMART sant 15 65 IPR001005 -
Vian1g00772 302 Gene3D - 15 68 - -
Vian1g00772 302 CDD SANT 71 114 IPR001005 -
Vian1g00772 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Vian1g00772 302 FunFam MYB-related transcription factor 15 68 - -
Vian1g00772 302 CDD SANT 18 63 IPR001005 -
Vian1g00772 302 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00772 Vian-Chr1 8072392 8073659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00772 3 294 MYB Transcription Factor Family AT5G62470 49.716 7.95e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g00772 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00772 K09422 - gmx:100812460 446.432