Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00758 ATGGCAAATTCTGCTTCTGCTAGCTTCTTCACTCAAGCAAAAGCGCTTCTTCTCAAGAACATTACCTTCCAGAAACGGAATGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGCGGTGCTATGCGTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTGGATAAAAGCAAATTCAAATGCGGCTGCGTGTGTGCCGACAACAGAACCCAAATCTCTCAGTGCCCTAACTCAGAGAAGCGGTGCGGGGTCCAGTATTCCGATTTTTTTCAAGCCGCCATGTGCCCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCTGCTCCACCGAACCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTTTGCTCTTCACCGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAAGATGTTTCGGAGTACCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGAAATTAAATCATTAGGATTGCTGTTCATGCCTCATGGCTATTTTTGTAATGTCTATTTGCAATCCATTGTGCCACTCTTGGTGGTTCCCAAGGACTGTGTAGATGTAGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGATATCAACAGTGAGCTGTACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTCGGTATATGGTACAACTCAACCTACCATCAAGACACAGAATATACTGCCAATGCATTGTTGCGGGTTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCCCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTGGGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCATTCAAGGGAATACAAGGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGCGGTCTTAATTATTATGTTTGCTGAGTGGATTGTGATGCTTTTTGCTGCCTTCTACATTGATCAAGTTTTGACGTTAGGAAGTAGAAAAGGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGAATTATCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAAGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCCTGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCCACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTGAAAAATCTTAGAGGCTCAGTCCTAACACAAGCAGTAGAGGACTCTTTGAAGGATTTAAACCTTTTTCACGGAGGGGTTGCCGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAATTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAAGATTATGGAGTGTTGTCAAGCATGCAAAACAGAACCAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTAAATGGCAGTTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGATATGGAGGAACTTACGTGTTGACAGTGACAACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATATCATCTCTCGGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACGTTGGAAGATGTATTCATCAAGCTGCTGTCACTAGTGAGACATGGCCGTTGGAAAGAACAAGCGCATCTCCAAAGGGAAGAAGGGTGGCAAGAAGAAGGATTGGGTACCAAGATTGCCTCGGAAGGACTCAAACATAAAGTCTTTGAGGTCTCATTGGTTGATCTTCAAGGAGATGAGGATCATGCATTCAGGAAGATAAGGCTGAGAGCTGAAGATATTCAAGGGAAGAATGTCCTGACAAATTTCTGGGGAATGGATTTCACCACAATCAAACTGAGGTCTTTGGTTCGAAAATGGCAAACACTTATTGAAGCCCATGTGGATGTGAAGACAACTGATAGTTACACATTGAGGATGTTTTGTATTGGATTCACCAAGAGAAGAGTTAACCAGGTGAAGAGAACCTGTTATGCCCAATCAAGCCAAATTAGACATATACGTAGGAAGATGAGAGAGATCATGACCAACCAAGCAATATCCTGTGATTTGAAGGAGTTGGTCCGAAAGTTTATTCCTGAGATTATTGGAAAAGAAATTGAGAAGGCAACGTCTAGCATTTATCCTCTGCAGAACGTGTTTGTCCGAAAAGTCAAGATTCTTAAAGCTCCGAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGCACAAAGGTAGAAAGACATGCTGATGAAATAATTGTAGAGGAACCCACCGAAATTATTGGAGCTTAA 3243 0.4197 MANSASASFFTQAKALLLKNITFQKRNVKTNVRLILFPAVLCVLLFVLQLLFDTQLDKSKFKCGCVCADNRTQISQCPNSEKRCGVQYSDFFQAAMCPIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSEKMFRSTLSISDFGSNFLAGLAVNVLEIKSLGLLFMPHGYFCNVYLQSIVPLLVVPKDCVDVEIKCALAKNLWRNSSTDINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYHQDTEYTANALLRVPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGPLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVTSVIYMLCFVIFGSLLGGWIILMELYPGFALYRGLYELAQFSIQGNTRGTDGMKWHNLSESTNGMKAVLIIMFAEWIVMLFAAFYIDQVLTLGSRKGPLFLLKGFQKKSPFQKLDTQMQVSKELSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPPGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDNLTGREHLLFYGRLKNLRGSVLTQAVEDSLKDLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKIVYMDEPSSGLDPASRKRLWSVVKHAKQNQAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFTVSAWGLVDTTLEDVFIKLLSLVRHGRWKEQAHLQREEGWQEEGLGTKIASEGLKHKVFEVSLVDLQGDEDHAFRKIRLRAEDIQGKNVLTNFWGMDFTTIKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRVNQVKRTCYAQSSQIRHIRRKMREIMTNQAISCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERHADEIIVEEPTEIIGA 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00758 1080 CDD ABC_subfamily_A 549 759 - -
Vian1g00758 1080 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 545 771 IPR003439 GO:0005524
Vian1g00758 1080 SMART Ribosomal_S3Ae_2 850 1040 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vian1g00758 1080 Gene3D - 537 801 IPR027417 -
Vian1g00758 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 766 IPR027417 -
Vian1g00758 1080 FunFam ABC transporter A family member 7 534 799 - -
Vian1g00758 1080 Hamap 40S ribosomal protein S1 [RPS3A]. 796 1080 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vian1g00758 1080 SMART AAA_5 575 809 IPR003593 GO:0016887
Vian1g00758 1080 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 395 496 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vian1g00758 1080 Pfam ABC transporter 570 711 IPR003439 GO:0005524
Vian1g00758 1080 Pfam Ribosomal S3Ae family 875 1040 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vian1g00758 1080 ProSitePatterns ABC transporters family signature. 684 698 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00758 Vian-Chr1 7904257 7928296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00758 872 1080 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 84.762 1.10e-120 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00758 - - jre:109004357 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00758 1 7904257 7928296 Vian1g00758 1 7904257 7928296 ECH