Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00753 ATGGAGCTTGCTTCCGAGAGATCTGGTAACGGAGGAGGTGGACTCAAGGAAGAAAACAGAACTGATGAGTATACTGTTGCTGATGATGAAGATGGTCCTCGTAGACAAGAAATTATTCTAGAGGAAGCACCCATAGAGGAGGCTGGACCTAGCACATCAGCAGACAAAAAGGAAGAGGTTGATGATCAACTTGAGAGCACGAAAAGTGAAATGGGTGTGGTGAGAGAAGAAAATGAACGGTTAAAGAGGTCTCTGCACAAAATAATGAATGAGTATCGGACACTGGAAATGCAATTTCAAGACATACTTAAGCAAGGGACGAAAAGGAAAAACGGTAACGAAGAAGACACAGTAGAGGAATCGGATCTAGTTTCTCTGAGCCTAGGAAGAGTTCCGAGCAATCAAAGAAACGAAGAGAAAACAAAGGTTTATAAGGCATTGAAGGATGATGAAGGGTTTAACCAAGAGTTGACTCTTGGACTAGAATGCAAATCAAAGTCGGGAAGCACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAACAGTTCTGAAGTTCGAAAGGAAGAAGCTGGGGAAACTTGGCCACCCAGTAAGGACACACAGAAGGCAATTAGGGACACAGAAGATGAAGTTGCTCAGCAAAACCCTATGAAGAAGCCACGAGTTTGCGTTAGAGCAAGATGTGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACCATTGCACCATCATGTCCAGTCAGAAAACAGGTGCAAAGATGTGTCGATGACATGTCCATTTTAATTACGACATATGAAGGGACCCACAACCACACTCTTCCACCTTCGGCTACTGCCATGGCATCCACAACTTCTGCAGCAGCCTCCATGCTTCTTTCTGGTTCTTCAACCTCTCTCTCTGTCTCAGCACCGTCAACAACAGCAACCAATCTCCACGGCCTCAATTTCTATCTATCAGATGGTGCAAAACCAAGGCAATTATACCTGTCAAACCCTGCACTGTCGTCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCTTCCTCATCACCCTTCGTTAGATTCGCTTCAAACTACAACCAACCCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGTACTTCCTCAGAAATCAACGCATTGTCTTGGAGCAACGGCTTCCTTACCAATAATAATACTATTCAACCTACATACAATAGCAGGAACATACTTGGGAATGTAAACTTTGGGAGGCAACAAGTGGAAAATATATACCAATCCTATCTGCAAAAGAACAACAGCAATATTCCAAGCGTTCCTCAAGGTGGTGTACCGGCTGATACTATATCTGCAGCAACGAAAGTGATCACAGCAGACCCCACTTTTCAATCAGCTTTGGCAGCAGCGCTCACTTCGTTTATTGGTGGCGGTGTTCGAGGAAATCAAGGAGGTAACAGTGTTGGTGAAAGTCCAAGTTTGGGTCAAAACTTGAAGTGGGGTGAGGTGTTTGCAGCGTCTAATAATTCATCTTCTACCTTGTCTTGTTCAACTTCGAAAGTCAATGGTTGTGCATCGAGCTTCTTGAACAAAACGCCAGCAAATAATACACAGACGAAAAGTCTGGTGTTTCTACCGCCGTCGTCTTTACCGTTTTCTACCCCCAAAAGTGCATCTGCGTCTGCATCTGCATCTCCGGCTGATAATAGCGACACCACCAATTAA 1782 0.4478 MELASERSGNGGGGLKEENRTDEYTVADDEDGPRRQEIILEEAPIEEAGPSTSADKKEEVDDQLESTKSEMGVVREENERLKRSLHKIMNEYRTLEMQFQDILKQGTKRKNGNEEDTVEESDLVSLSLGRVPSNQRNEEKTKVYKALKDDEGFNQELTLGLECKSKSGSTTEALPNPSPENSSEVRKEEAGETWPPSKDTQKAIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSLSVSAPSTTATNLHGLNFYLSDGAKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFASNYNQPRYPSSSSLSFSTSSEINALSWSNGFLTNNNTIQPTYNSRNILGNVNFGRQQVENIYQSYLQKNNSNIPSVPQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVRGNQGGNSVGESPSLGQNLKWGEVFAASNNSSSTLSCSTSKVNGCASSFLNKTPANNTQTKSLVFLPPSSLPFSTPKSASASASASPADNSDTTN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00753 593 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00753 593 MobiDBLite consensus disorder prediction 106 140 - -
Vian1g00753 593 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 49 509 IPR044810 GO:0003700
Vian1g00753 593 Pfam WRKY DNA -binding domain 234 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00753 593 MobiDBLite consensus disorder prediction 165 181 - -
Vian1g00753 593 MobiDBLite consensus disorder prediction 51 78 - -
Vian1g00753 593 MobiDBLite consensus disorder prediction 1 78 - -
Vian1g00753 593 Coils Coil 57 98 - -
Vian1g00753 593 MobiDBLite consensus disorder prediction 182 202 - -
Vian1g00753 593 FunFam probable WRKY transcription factor 31 218 295 - -
Vian1g00753 593 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00753 593 MobiDBLite consensus disorder prediction 571 593 - -
Vian1g00753 593 SUPERFAMILY WRKY DNA-binding domain 226 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00753 593 Gene3D WRKY domain 218 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00753 593 MobiDBLite consensus disorder prediction 165 202 - -
Vian1g00753 593 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00753 Vian-Chr1 7854730 7858318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00753 32 499 WRKY Transcription Factor Family AT1G18860 40.665 5.83e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g00753 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00753 - - pvu:PHAVU_003G192000g 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00753 1 7854730 7858318 Vian1g00753 1 7854730 7858318 ECH