Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00742 ATGGGGATTGTAACATGCATTTCTCTGGTGATTATGGTCACAGTTTTCTGCCCTTCTTCTCTTGCTCTCACCCTGGATGGTCTGACCTTGTTGGAAATAAAAAGTGCTTTGAATGATACTAAGAATGTTCTGAGCAACTGGCAAGAGTTTGATGAGACTCATTGTAGATGGACTGGTATCTCTTGCCACCCTGGCGATGACCAAAGAGTTCGCTTAATAAATCTGCCATACATGCAACTTGGAGGAATTTTATCTCCCAGCATTGGTAAACTCAGTGGACTACAAAGACTAGCCCTTCATCAGAACAGCTTGCATGGAACCATTCCTAATGAACTTACCAATTGTTCTGATCTAAGAGCACTGTACTTGAGGGGTAACTTTTTTGAAGGAGGCATACCGTCAAACATTGGAAATCTTTCATATTTGAATATATTGGATTTATCGAGTAACTTATTGAAAGGTGCCATACCTTCCTCTATTGGCCGTCTCTCACAGTTGCAAATTCTGAACTTGACTACCAATTTCTTTTCTGGTGAAATTCCTGACATTGGAGTACTGAGCACCTTTAGCAAATACTCGTTTGAGGGAAATTCAGATCTTTGTGGGCGGCAAATCGAAAAGCCATGTCGGACATCACTTGGTTTTCCTGTGGTGCTGCCCCATGCTGAAAGTGATCAAGCTGCAGTCCCCGCCAAAAGGTCTTCACGTTACATGAAGGTACTGTTAATTTATGCAATTGCGATTATGGGTATCGCACTTGTCATGGTGCTTTCATTTCTGTGGACTCGTTTGATATCAAAGAAAGAGCGAGCTGCAAAGAGATACACGGAAGTCAAGAAACAAGTTCATCCAGGAGCTAGCGCAAAACTTATCACATTCCATGGTGATCTGCCATACACATCGTCTGAGATCATAGAGAAGCTGGAGTCTCTAGATGAAGAGAATATATTAGGATCCGGAGGATATGGTACTGTTTACCGAATGGAGATGAATGATCGTCGTCTATTTGCTGTTAAACGGATTGATCGAAGTTATGCAGGGTCCGATCAAGTGTTTGAAAGGGAACTCGAGATCTTGGGGAGCATCAAACACACAAATCTTGTAAATATGCGTGGTTACTGCAGGCTTCCTTCTTCAAGATTCCTTATCTATGACTATTTGGTCTTAGGCAGCTTAGATGATGTCTTGCATGAAAATACTCAAGAAATCCTAGTACCGAACTGGAGTGATCGCCTAAAGATAGCTCTTGGTGCTGCCCGGGGTTTGGCTTACTTGCACCATGAATGCAGCCCAGAAATTGTTCACCGTAATATAAAATCTAGCAACATACTCTTTGATGAATGCATGGAGTCACATATATCCGATTTGGGCCTTGCGAAGCTTTTGGTCGATGAGGAGGCACATGTTACCACAGTGGTAGCTGGCACATTTGGTTATTTGGCACCAGAGTATCTACAAAGTGGAAGAGCAACTGAGAAGTCGGATGTGTATAGCTTTGGAGTTCTTTTACTCGAACTTGTAACTGGGAAGAGGCCAACAGATCCTTCATTTGTGAGAAGAGGTTTAAATGTTGTTGGTTGGGTGAACACATTACTGAGAGATAACAAATTGAAAGATGTGGTGGACAAAAGATGCAGAATTGCAGATGAAGGAACCCTTGAAGTTATTCTTGAGCTAGCATTAAGATGCACAGATGGAAATGCAGATGATCGTCCATCAATGAACGAGGTGTTACAGTTGCTGAAGCAAGAGGTTATGTCCTGTCCAAGCGAGTTTTATGAGTCTGATTCAGATTACTGA 1800 0.4222 MGIVTCISLVIMVTVFCPSSLALTLDGLTLLEIKSALNDTKNVLSNWQEFDETHCRWTGISCHPGDDQRVRLINLPYMQLGGILSPSIGKLSGLQRLALHQNSLHGTIPNELTNCSDLRALYLRGNFFEGGIPSNIGNLSYLNILDLSSNLLKGAIPSSIGRLSQLQILNLTTNFFSGEIPDIGVLSTFSKYSFEGNSDLCGRQIEKPCRTSLGFPVVLPHAESDQAAVPAKRSSRYMKVLLIYAIAIMGIALVMVLSFLWTRLISKKERAAKRYTEVKKQVHPGASAKLITFHGDLPYTSSEIIEKLESLDEENILGSGGYGTVYRMEMNDRRLFAVKRIDRSYAGSDQVFERELEILGSIKHTNLVNMRGYCRLPSSRFLIYDYLVLGSLDDVLHENTQEILVPNWSDRLKIALGAARGLAYLHHECSPEIVHRNIKSSNILFDECMESHISDLGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVRRGLNVVGWVNTLLRDNKLKDVVDKRCRIADEGTLEVILELALRCTDGNADDRPSMNEVLQLLKQEVMSCPSEFYESDSDY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00742 599 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00742 599 Gene3D Phosphorylase Kinase; domain 1 271 386 - -
Vian1g00742 599 SUPERFAMILY L domain-like 26 189 - -
Vian1g00742 599 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 44 182 - -
Vian1g00742 599 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Vian1g00742 599 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Vian1g00742 599 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00742 599 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Vian1g00742 599 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 186 - -
Vian1g00742 599 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vian1g00742 599 Gene3D Transferase(Phosphotransferase) domain 1 388 593 - -
Vian1g00742 599 SUPERFAMILY Protein kinase-like (PK-like) 294 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00742 Vian-Chr1 7711693 7715445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00742 9 589 Receptor kinase-like Gene Family AT2G35620 47.251 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vian1g00742 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00742 - - gmx:100803920 1013.06