Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00737 ATGGGGAACTGCAACGCGTGCGTGAGAGATGACGTGGCAGAGTCAAATCGCGGGAGGAAGAAGAAAACGAAGCCCAACAACCCTTACGCGGAGGAGACGCTCCGTTCGGGAGTTCCGATCCGCGTGCTGAAGGACGTGACGTCGCGGAGCTTCATCGGGGACAAGTACGTGATAGGTCGGGAGCTAGGTCGTGGGGAGTTCGGGATAACGTATCTGTGCACGGACCGGGAGACGAAGCAGGAGCTGGCCTGCAAGTCTATCTCCAAGCGCAAGCTCAGGACCGCCGTTGACGTGGAGGACGTGCGGCGCGAGGTGGCCATCATGTCCACTCTTCCGGACCACGCCAACGTCGTCAAGCTCAAAGCCACTTACGAGGACCAGGAGAACGTTCACCTCGTCATGGAGCTCTGTGCCGGTGGCGAACTCTTTGACCGGATCGTCGCACGTGGCCACTACAGCGAGCGTGCGGCCGCGCACGTGGCCAGAACCATTGCTGTGGTCGTCAGAATGTGTCACGCCAATGGCGTCATGCATCGAGACCTTAAGCCGGAAAATTTCCTCTTTGCGAATAAGAAGGAGAATTCTGTACTTAAAGCCATTGATTTCGGTCTCTCCGTGTTTTTCAAACCTGGGGAGAGATTTTCTGAGATTGTGGGGAGTCCTTACTACATGGCACCAGAGGTATTGAAGAGGAATTATGGGCCAGAAGTGGATGTGTGGAGTGCTGGTGTGATTCTTTATATTTTATTGTGTGGGGTTCCTCCATTTTGGGCAGACGACGAACGAGGGGTGGCTCTGGCGATTTTGAGGGGAGTGATTGACTTCAAGAGAGAACCGTGGCCTCAGATTTCGGACAGTGCGAAGAGCCTTGTGCGCCAAATGTTGGAGCCTGATCCCAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGTTGCAGAATGCAAAGAAAGCTTCAAATGTTCCGTTAGGAGATATTGTGAGGACGAGGCTTAAGCAGTTCTCTGTCATGAATAGATTCAAAAAGAGAGCACTTCGGGTAATTGCAGAGCACTTATCTGTTGAAGAGGTAGAAATCATCAGAGACATGTTTACATTGATGGATACTGACAAAGATGGCAAAGTAACATACGAGGAACTGAAGGCTGGGTTGCAGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATCAAGATGCTGATGGATGTGCTCTTTGAAACTATTTTCTGTTGCATGATTTCTTGGCATGGAATGCAGTTCTACAAAGAAGTAGAAGCCGATGTCGACGGGAACGGAGTACTTGACTATGGAGAGTTCGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAACATTTCCGAAAAGCATTCATGTTTTTTGACAAAGACGGGAGTGGCTATATTGAGTTTGGGGAGCTAGAGAGAGCATTAGTAGATGAGTCGGGAGAAAATGACACTGCCATATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAAGAGTTTGTGGCGATGATGAAAACTGGAACCGATTGGAGAAAAGCATCTAGACAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGCTCACTTCAGCTTCATGACGGAATTAGTGGTCAAGCTGTGGTGGTTTGA 1683 0.4955 MGNCNACVRDDVAESNRGRKKKTKPNNPYAEETLRSGVPIRVLKDVTSRSFIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHANVVKLKATYEDQENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAVVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWADDERGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIRDMFTLMDTDKDGKVTYEELKAGLQKVGSQLAEPEIKMLMDVLFETIFCCMISWHGMQFYKEVEADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIEFGELERALVDESGENDTAILNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00737 560 CDD STKc_CAMK 55 313 - -
Vian1g00737 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 512 - -
Vian1g00737 560 FunFam calcium-dependent protein kinase 13 142 322 - -
Vian1g00737 560 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Vian1g00737 560 Gene3D Transferase(Phosphotransferase) domain 1 142 322 - -
Vian1g00737 560 Gene3D Phosphorylase Kinase; domain 1 57 141 - -
Vian1g00737 560 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Vian1g00737 560 SUPERFAMILY Protein kinase-like (PK-like) 53 322 IPR011009 -
Vian1g00737 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Vian1g00737 560 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Vian1g00737 560 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00737 560 ProSiteProfiles EF-hand calcium-binding domain profile. 487 522 IPR002048 GO:0005509
Vian1g00737 560 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Vian1g00737 560 Gene3D - 323 520 - -
Vian1g00737 560 FunFam Calcium-dependent protein kinase 1 58 141 - -
Vian1g00737 560 Pfam Protein kinase domain 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00737 560 FunFam Calmodulin A 418 519 - -
Vian1g00737 560 SMART serkin_6 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00737 560 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Vian1g00737 560 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Vian1g00737 560 SUPERFAMILY EF-hand 347 543 IPR011992 -
Vian1g00737 560 Pfam EF hand 362 388 IPR002048 GO:0005509
Vian1g00737 560 SMART efh_1 491 519 IPR002048 GO:0005509
Vian1g00737 560 SMART efh_1 361 389 IPR002048 GO:0005509
Vian1g00737 560 SMART efh_1 455 483 IPR002048 GO:0005509
Vian1g00737 560 SMART efh_1 421 447 IPR002048 GO:0005509
Vian1g00737 560 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Vian1g00737 560 CDD EFh 455 517 IPR002048 GO:0005509
Vian1g00737 560 Pfam EF-hand domain pair 454 517 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00737 Vian-Chr1 7624736 7627653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00737 1 560 EF-hand Containing Proteins AT1G74740 75.709 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian1g00737 Pkinase 2.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00737 K13412 - gmx:100800559 998.808