Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00735 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCAGACATTCTGTTGCGAATTCCTATCGTCGATGCTCCCATACTCGTCTTTGTTTGCTTTCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCTCTTGGCGGAAACGGCGTCGTTGGAGAACGAGCCACGCCGTTGCCACCAACTGATCCTTCTGCTTCAACGTAGGTTCCAGTTTCTGAAATTAGCACATAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCTTGCACTGGATGCTCATGTGAAAAATGTCGTTTGTACATATTCGCTTGAACATAACAGCACCTCGGAGCTTTTTGGATCTGTTTTCCACTTCTTGGAAGAGCTGATGGTTCCTAAAGAGAATATTTCGAAGCTGTTCCAAGAACTTGTGTACTGTATTGGTATCTTGCAAAGCTACATCTACAAACATATGCTGAAAGAAGAAAAACAGGTTTTTCCCCTGTTGATGGAGAAATTATCAACTGAAGAACAGGCCTCTCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAATCAGAAGTTACCCAGTGTTTAAATGAAATCGCTCCAATGGAAAAAGCCCTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGAGGGTTTCCTACATATAGAAAGATCACTAGAGCTGAGTTCTATTAGGAAAAGCGAAGAAACTTCAAGTATGACGGAAGTTAATGGCCGAGAAATAGAAGATGGGGCCAACCAGGTTAACGTCCTTCATTTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAGTACTTATCCAGCTAAAGTTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAAAAATTCTTTAATCCTGTACTGAGTAAATATGCTTATGGCTGGTTGTCCAAGTCTATTGAACAATTTCTGAGTGAAAGTAACATTGAAGATATACAACAGTTGCTATTCTATAACTCAGAAAGTGGAATACCTTTGACCAAGTTCGTAGAGAAGCTTTGCCGAAAACTTGAATCATTTGTGTCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTGTTTCCCATATTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTGCTCAAATGTGTTATAACTTGGTTTTCAGTTCGATTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCATTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTCAGACTAGACTTGCAAACCATGTTCAAAAGAAGATGCTTTAAGTCACCTGAACAAATTAAGGAAGCTCATGGATTTTCTTTCTTAAATTCTGAGAAGCAGCTTTATAAAATCTCTGACCAGAATTCTTTGTCCTGTTCCTCCTCGTCTGGATCCAGTAATGTAAACAAGCATGAGATACCATATTCTATAGGAATTAATCTGCACATATTTTTTCCTGCCACAGTTGGGAAGTTATATCAGTATCCTGCATTACATGCAGCAGAACTATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCCAGCTAGAAAAAAATGGTAAGTTGCTTATGGATTTCCAAAAACGATTCCATCTCATATATTTTCTTCATCAAATCCACAGTGATGCTGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCCTACACTTTTGATCACAAACATGAAATTGAACACTTCAATAAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAGTTTCTACAACTGATTCAAATGTAAAGGAGGCGGGACTGATGAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATACATCGCTTTCCAATCATATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAATCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGAAGAACAACACGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGGTGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCTAAGGTAACGGAGGGCTCAAACGATGCCCCTCCTCAGCCTGTTGAGCCAATGGAGATCATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTGCAAGAAGAATCATCTGCCAACAAGAGCATAAATTTTTTGGAGAAGGATCGTGTTGGTGATAATGTTGAGCTGTCTAACTGCAACCACAATGATAATGTTAAGGTTCATAATGCAGAAAAAAAAGATAATCAATGTTCAAAAAGCACAAATCAATTTCATGATCACGACAAACATGCTTGCAATGAGGTAGCAGACTTCATAAATCCGGTAGTCAATGTAGGTAAGTCGTCTAAGCTTTGTGACGAATCTGGGCGTTATGACCGACTTTTGAAATTGAGCCAAGATGATCTGGAGACTGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAGCCAGCAGATCTCTTCTACAGAAGTCAGTATAAAAAATGATGAACCGGAATTTCCTGGGAAGCATCCATCGTACAGGGATCCTCTCAAACTAATCTACGGATGTAAACACTACAAGAGGAATTGTAAGCTTTTTGCTCCATGTTGCAACCAACTTCATACCTGCATACATTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCGGTGCCACATGCTCAACAATTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATCTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCCCGTTCTCTTATGGCGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATTTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACAAGCTTTAATTATATCTGCCCCATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTTCCGATGAGATGTCAGGTCAAACTCAGGCTATATTATGTAATGACTGTGAAAAGAAAGGATCAACTCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACCAGAGTTCTATGA 3786 0.3917 MDDGDPSLSDKEEENDEEDVADILLRIPIVDAPILVFVCFHKAFRSELDHLRLLAETASLENEPRRCHQLILLLQRRFQFLKLAHKYHCAAEDEVIFLALDAHVKNVVCTYSLEHNSTSELFGSVFHFLEELMVPKENISKLFQELVYCIGILQSYIYKHMLKEEKQVFPLLMEKLSTEEQASLVWQFICSVPIMLLEEVLPWMVSFLSASKQSEVTQCLNEIAPMEKALQEVLVSWLRSNKQTFTETCFQSGEFQGVEGFLHIERSLELSSIRKSEETSSMTEVNGREIEDGANQVNVLHFWHNAIKKDLKEILKELYLLRKSSCFQNLDSVLIQLKFFADVLIFYSNAQKKFFNPVLSKYAYGWLSKSIEQFLSESNIEDIQQLLFYNSESGIPLTKFVEKLCRKLESFVSGVNKQFAFQENEVFPIFRKNCRNGMQERLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKTSIEKFRLDLQTMFKRRCFKSPEQIKEAHGFSFLNSEKQLYKISDQNSLSCSSSSGSSNVNKHEIPYSIGINLHIFFPATVGKLYQYPALHAAELSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAQLEKNGKLLMDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHEIEHFNKISHILDKMSRLHLSVSTTDSNVKEAGLMRYQHLCRKLQEMCKSMHTSLSNHINREEIEIWPIIRKFFTNQEQGKIMGCMLGRIRAEILQDMIPWLMASLTQEEQHVSMFLWSMATKNTMFGEWLGEWWDGYSLAKVTEGSNDAPPQPVEPMEIISKYLSEEILNELQEESSANKSINFLEKDRVGDNVELSNCNHNDNVKVHNAEKKDNQCSKSTNQFHDHDKHACNEVADFINPVVNVGKSSKLCDESGRYDRLLKLSQDDLETVIRRVSRDSCLDPQKKSYIIQNLLMSRWIISQQISSTEVSIKNDEPEFPGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLMIQPIGATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMAHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTSFNYICPICSKSLGDMQVYFRMLDALLAEESISDEMSGQTQAILCNDCEKKGSTPFHWLYHKCPSCGSYNTRVL 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00735 1261 CDD Hr-like 36 170 - -
Vian1g00735 1261 SMART ring_2 1155 1196 IPR001841 -
Vian1g00735 1261 Gene3D - 1226 1261 - -
Vian1g00735 1261 SUPERFAMILY CHY zinc finger-like 1018 1083 IPR037274 GO:0008270
Vian1g00735 1261 ProSiteProfiles Zinc finger CTCHY-type profile. 1091 1154 IPR017921 -
Vian1g00735 1261 ProSiteProfiles Zinc finger CHY-type profile. 1020 1089 IPR008913 GO:0008270
Vian1g00735 1261 CDD Hr-like 612 758 - -
Vian1g00735 1261 Pfam Ring finger domain 1153 1196 IPR001841 -
Vian1g00735 1261 SUPERFAMILY Zinc hairpin stack 1092 1147 IPR037275 -
Vian1g00735 1261 FunFam Zinc finger protein-related isoform 1 1150 1199 - -
Vian1g00735 1261 Gene3D nmb1532 protein domain like 32 190 - -
Vian1g00735 1261 Gene3D nmb1532 protein domain like 606 778 - -
Vian1g00735 1261 Gene3D nmb1532 protein domain like 292 444 - -
Vian1g00735 1261 SUPERFAMILY RING/U-box 1154 1205 - -
Vian1g00735 1261 CDD RING-H2_Pirh2-like 1154 1197 - -
Vian1g00735 1261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1148 1199 IPR013083 -
Vian1g00735 1261 ProSiteProfiles Zinc finger RING-type profile. 1155 1197 IPR001841 -
Vian1g00735 1261 Pfam Zinc-ribbon 1202 1259 IPR039512 -
Vian1g00735 1261 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 654 1261 - -
Vian1g00735 1261 Pfam CHY zinc finger 1027 1101 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00735 Vian-Chr1 7584922 7595141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00735 32 853 C2H2 Transcription Factor Family AT3G18290 33.521 6.85e-130 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00735 K16276 - gmx:100802706 2263.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00735 1 7584922 7595141 Vian1g00735 1 7584922 7595141 ECH