Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00726 ATGTCTCGTGCCTGCGCTGCTACAGACTCGGTTGCCTCCGGCGAGATCATGCTGTTTGGGGTTCGAGTGGTAGTCGATTCCATGAGAAAAAGCGTCAGCATGAACAACCTTTCACAGTACGAGCATAGGCACGACGCTAACAACAACAATAAAGATGTTCTCGCAGTTGGTTATGCCTCAGCCGATGATGCCGTTCCTCATAACACTGGTCGCCACCGTGAGCGGGAGCGCAAGCGAGGAGTTCCGTGGACAGAAGAAGAGCACAAACTGTTTTTGGTTGGGTTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTATGTGAAAACGCGAACTCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCAGAAGAAGCAACCTGAATCGTCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACATGGTATCTGCAATTCCAATGGAGGAAGAACAGGTCCAGAATCACGACACCCTGTTTCATCCGCAAGCAGTGTGCCCAGCAGTTCCTGAAACTAGCAAAAGTGGAATTCCAATGATGCCAGTGTATCAGTTTGGGATTGGTTCTGGGGCTATTGCAGTCCAAGGTGGGAAACCATTAGAAGAACTCACTCTGGGACAAGGAAACATAGAGCCCAATGTGCCAATCAATCTGGTCCGTGTAATTCCTGTTGTTGCAGATCCTAAAGCATCCACAGTGTCGGATATCATCACCCCAAGTTCTAGTTCTGCTCTTGACCCACCCACACTGTCCTTGGGGCTAGCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCTGCTTTACATGCCATGCCATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTAA 882 0.4909 MSRACAATDSVASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHRHDANNNNKDVLAVGYASADDAVPHNTGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDMVSAIPMEEEQVQNHDTLFHPQAVCPAVPETSKSGIPMMPVYQFGIGSGAIAVQGGKPLEELTLGQGNIEPNVPINLVRVIPVVADPKASTVSDIITPSSSSALDPPTLSLGLAFSSDQRQTSSRHSALHAMPCFSNGDSIISVA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00726 293 ProSiteProfiles SANT domain profile. 78 131 IPR017884 -
Vian1g00726 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 131 IPR017930 -
Vian1g00726 293 SUPERFAMILY Homeodomain-like 77 132 IPR009057 -
Vian1g00726 293 SMART sant 79 129 IPR001005 -
Vian1g00726 293 FunFam transcription factor MYB1R1 81 132 - -
Vian1g00726 293 CDD SANT 82 127 IPR001005 -
Vian1g00726 293 Gene3D - 81 133 - -
Vian1g00726 293 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Vian1g00726 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 129 IPR006447 GO:0003677
Vian1g00726 293 Pfam Myb-like DNA-binding domain 82 127 IPR001005 -
Vian1g00726 293 PANTHER TRANSCRIPTION FACTOR KUA1 2 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00726 Vian-Chr1 7448710 7450211 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian1g00726 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00726 - - gmx:780536 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00726 1 7448710 7450211 Vian4g00800 4 10487391 10490256 PCT