Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00716 ATGGAAGCAGAGAGATACACTAGTCAGCGGTGGCGTCCTACCGAAGATCAGACCCAGATGATGACCAGAATCTACAACTTTGGGGTCACACACCCAAGCAGAGCGCAAGTTGTCGAGATCACGTCTCGACTAAGGATCTTCGGAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAATCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCTACTGGCACTCAGTTTTCGCAACTGCCACTATATATGTACGTTTTTTTTTGGCCGAAAGATTATGACTGGGTGATTATGAGGGCACCGAGGCTGCTGAATCTGTTTCCCGTTCCGATCATCATCGACGACGATAGGGACGTACGTCAAATCCCGCCACCTATGCTTATCACATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGACCGCCACAACCAGCTCGAGAATTCTTTTGTTGA 468 0.5128 MEAERYTSQRWRPTEDQTQMMTRIYNFGVTHPSRAQVVEITSRLRIFGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYVFFWPKDYDWVIMRAPRLLNLFPVPIIIDDDRDVRQIPPPMLITFRTRAPSTELSLRPPQPAREFFC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00716 155 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 72 IPR044559 GO:0003700
Vian1g00716 155 Gene3D - 8 73 - -
Vian1g00716 155 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian1g00716 155 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00716 Vian-Chr1 7325302 7325858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00716 1 93 Wox Gene Family AT5G59340 34.409 4.25e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian1g00716 Homeodomain 3.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00716 - K08052 vum:124821070 267.7