Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00696 ATGCCTCATCCCACGCCCCACCCCCAACCCCAACCCCAACCCCAACCAAAACCTAATCCCAACCTTCTCTCTCTCTTCCTCAAACCCATCATTATGCTTCTTCTCACCTCCCTTTTCTTCCTCTTCATTGGCTTCGCCGCCTTTCTCCTCCTCCACCTCTTCCTCCTTGGCGGCGCCTTCCACCGTCTTCGCTTCCGCCCCTCCGCCGCCACTGCCTCTGCTTCCAACGCCCTCCTTCCTCGCGAAATCAACAAGCTACCTCGCTTCCGCCTCTCCCATGGATCCCAAATGCTAGCCGACACCCACTGCGTTGTCTGTTTAGACGCCTTTCGCAGCGGCCAGTGGTGCCGGAAACTCACCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAAGTCGCCGCATGCCCCACGTGCCGTACATCCGTGCGATTTAATGCCGGGCCTCCAGTACAAGACTCGGCACTAGGTTCTACTTTTGCCCAGTTTCGAGCCTGCGAAACTGACTCCAATGCTGTCACCCTTTTATAG 546 0.5806 MPHPTPHPQPQPQPQPKPNPNLLSLFLKPIIMLLLTSLFFLFIGFAAFLLLHLFLLGGAFHRLRFRPSAATASASNALLPREINKLPRFRLSHGSQMLADTHCVVCLDAFRSGQWCRKLTACGHVFHRRCVDTWLLKVAACPTCRTSVRFNAGPPVQDSALGSTFAQFRACETDSNAVTLL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00696 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 9 157 - -
Vian1g00696 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 152 IPR013083 -
Vian1g00696 181 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vian1g00696 181 SUPERFAMILY RING/U-box 94 151 - -
Vian1g00696 181 Pfam Ring finger domain 102 145 IPR001841 -
Vian1g00696 181 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00696 Vian-Chr1 7060338 7060883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00696 17 174 C3H Transcription Factor Family AT2G18670 44.654 6.06e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00696 - - var:108321550 256.144