Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00687 ATGAGAGATGGTTTCCCTCAGTTTGTGAATGTAGTTTGGGACCCTTCTCAGCAAAAGTACACCGCATCTGGATATTGCATGGATGTTTTCAACGCCGCTATAACCTACTTACCCTTCAATGTTTCCCTAGGTGTTTTACCTGTTGTTGTTGAGTCAAGCCAGGTTTATAGAACACGCCATGCAAATCCAAAACAAATCTTGACAGAGGGCGAAGTTATGGTAGGAGATGTGACTATCCTGGCCAACCGTTCGAAGGTTGTAGATTTCACAGTACCATATATTGCATCAGGTGTTAAAATGGTAGTACCAGTTAAACACGGGAGGGATCAAAACATGTGGACTTTTGTTAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTGCCTTCATAGGACTTGCCATACTCATTATGGAAAGAAATGTTAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGCTTTGCCCTGCAACCATCTTGTGGTTTCCAATATCACAAGCCATTCTTCCTGAAAGAGAAGTAGTGGTAAAGAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTACTGGCGTTCGTCCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTAGATCAACTGCGACCCAGTTTTCTGAACCTTAATGATATAAGGAGAGGGGGTTACTACGTTGGATACCAGTCTGGGTCTTTCGTTTACGACGTCTTGATTGACCAATTTAAGTTTGACCCATCCAAACTAAGGCCATACAGAAACATTGCCGAGTACCATGATGCTCTAAAGCTTGGAAGCCAAAATGGGGGTGTTGCAGCTATATTCGACGAAGTTCCCTACCTTAATATTTACCTTCAAGAATACGGATCCAATTACATTATGTCTGGCCCCGAATACAGAAATGCCGGGTTTGGTTTTGTATTCCCTTTAAATTCCAATCTCACGGATTACTTTTCGACAGCCATCCTGAATGTGATTGAAAATGGAATAATGAATGAGATTGAGGAAAAATATTTTGGAAAGAATTATATTGGAGAAGTTTCGTCTGGGGAAATATCTTCTGAAACTCTCAGTCTCAGCTTTCATAGCTTCTTTGGGCTTTTCGTTATTTCTGGGATTTCTACTTTGTTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCAAAGACTCATTTTGATGGCTAAAGCATTGACTGAGATTATGTCCCCAATCCCTCTTTTCAAGAAGAAGACACGTACTCATCCAATTCATGATTCTACTCATGGAATGGAGGCTTAA 1302 0.4063 MRDGFPQFVNVVWDPSQQKYTASGYCMDVFNAAITYLPFNVSLGVLPVVVESSQVYRTRHANPKQILTEGEVMVGDVTILANRSKVVDFTVPYIASGVKMVVPVKHGRDQNMWTFVKPFSWDLWLSIIIISAFIGLAILIMERNVNALPNQEGSPNQKKLCPATILWFPISQAILPEREVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNLNDIRRGGYYVGYQSGSFVYDVLIDQFKFDPSKLRPYRNIAEYHDALKLGSQNGGVAAIFDEVPYLNIYLQEYGSNYIMSGPEYRNAGFGFVFPLNSNLTDYFSTAILNVIENGIMNEIEEKYFGKNYIGEVSSGEISSETLSLSFHSFFGLFVISGISTLLALLVSERFIWQRLILMAKALTEIMSPIPLFKKKTRTHPIHDSTHGMEA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00687 433 Pfam Ligand-gated ion channel 350 381 IPR001320 GO:0015276|GO:0016020
Vian1g00687 433 Gene3D - 293 354 - -
Vian1g00687 433 Pfam Bacterial extracellular solute-binding proteins, family 3 71 349 IPR001638 -
Vian1g00687 433 SUPERFAMILY Periplasmic binding protein-like II 18 350 - -
Vian1g00687 433 SMART GluR_14 2 349 IPR001320 GO:0015276|GO:0016020
Vian1g00687 433 Gene3D - 113 248 - -
Vian1g00687 433 Gene3D - 1 112 - -
Vian1g00687 433 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 397 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00687 Vian-Chr1 6909878 6911705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00687 1 422 Ion Channels AT2G29110 38.202 3.23e-76 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00687 K05387 - gmx:100811144 577.015