Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00685 ATGTGTAAGTGCTTCTCGTCCCTTTTCTCTCTGTTTTTGATTTTTTTGTTTGTGCTTCAACAAGCATCAACGGGGAATGCGTCAAATGCATCATCAGAGTATGAAGAGATCAAGTTGAGAGTAGGGGTGCCCAGGAAAAATGGTTTCCAACAATTTGTGCATGTAATTGGGGAAACTTCTCAAGAAAATTACAACATATCAGGATATTGCATGGAGGTTTTCAATGCCGTCATAACCCATTTACCGTTCAATGTTTCTCTACATGTTGAACCTCATGATATTGACTCAAGTGAGGGTTCTGGATACGACGCTCTTCTAAAACTAATTCCGTCAAAGTATGATGTCGTGGTCGGAGATATAACCATCCTAGCCAACCGTTCGAAGTTTGTTGATTTCACAGTGCCTTATACTGGATCGGGAGTTAAAATGGTAGTACCTGTTCGACATGGGAGGGATAAAAACATGTGGACTTTTGTCAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAACGTAAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGTTTCACCCTGCTACCTTCTTATGGTTTCCAATCTCACAAGCCATTCTTCCTGAAAGACAAGTAGTAGTAAAAAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTACACTGCGAACTTGACTTCTATATTGACCTTGGATCAACTGCAGCCAAGCTTTCTCAACGTGAATGACTTAAGAAAAGGGGGCTATTACGTTGGATACCAAACGGGGTCTTTCGTTCACGACGTGTTGGTTAAGCAATTTAAGTTTGACCCTTCTAAACTGAAGCCATACAACACCAGTTGCGAGTATCACGATGCTCTAAAGCATGGAAGCCAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTTCCCTACCTTAAAATCTACCTTCAAGAATACGGATCCAATTACATTATGTCTGGCCCCAAATATAGAAATGCTGGGTTTGGTTTTGCACTCCCTTTAAACTCGAATCTCACGGCGTACTTTTCGAGAGCCATCTTGCATGTGACTGAAAGTGATTTGATGAATGAAATTGAAGAAAAATATTTTGGGAAGAATGAAGTTGGTGAACAAAACTCGTCTGATGAAGCATCTTCTGCTCCTCTAAGTCTCAGCTTTCATAGCTTTGAGGGGCTGTTTTTGATTACAGGAATTTCAACTTTTTTTGCACTATTGATATCAGAAAGTGTTTTATGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCGAAGGTATTTGTCCTTCGTGGCGCCTACCACGGAAATACGCGTTCATCCAACTCATGATTCAACTCACGGTATAGAGGTCGTTTAG 1437 0.4113 MCKCFSSLFSLFLIFLFVLQQASTGNASNASSEYEEIKLRVGVPRKNGFQQFVHVIGETSQENYNISGYCMEVFNAVITHLPFNVSLHVEPHDIDSSEGSGYDALLKLIPSKYDVVVGDITILANRSKFVDFTVPYTGSGVKMVVPVRHGRDKNMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVNALPNQEGSPNQKKFHPATFLWFPISQAILPERQVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLNVNDLRKGGYYVGYQTGSFVHDVLVKQFKFDPSKLKPYNTSCEYHDALKHGSQNGGVAAIFDEVPYLKIYLQEYGSNYIMSGPKYRNAGFGFALPLNSNLTAYFSRAILHVTESDLMNEIEEKYFGKNEVGEQNSSDEASSAPLSLSFHSFEGLFLITGISTFFALLISESVLWQKPILMAKALSRRYLSFVAPTTEIRVHPTHDSTHGIEVV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00685 478 Gene3D - 31 155 - -
Vian1g00685 478 Pfam Ligand-gated ion channel 393 425 IPR001320 GO:0015276|GO:0016020
Vian1g00685 478 Gene3D - 156 295 - -
Vian1g00685 478 Pfam Bacterial extracellular solute-binding proteins, family 3 62 392 IPR001638 -
Vian1g00685 478 SUPERFAMILY Periplasmic binding protein-like II 11 393 - -
Vian1g00685 478 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 441 IPR015683 -
Vian1g00685 478 CDD GluR_Plant 38 390 - -
Vian1g00685 478 SMART GluR_14 38 392 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00685 Vian-Chr1 6899357 6901085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00685 38 433 Ion Channels AT5G11210 39.303 3.61e-90 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00685 K05387 - gmx:100807817 691.804