Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00680 ATGAAAATCATTAAAAGAACAAACCAAATTCATGCTTTTTTTTTGTTATTTCTTAGAAATGGGAGTTCTAAAGGAATTGCCAGGTATTGCTTTGAGCATGCACATGAAGGGTGCACAATGGTCTCAGTCGGAAGACGTGGTAAGGCAGATCAAAGTGTCGAACAAAACTCAACTCATTGTCAAGGTAATTCAATTCTCAGATATAATTTAACAAAATACAAATTACAATGGATGACAAGTCTCTTAAATATGGTAACTTGTATCTTTTCACTAGTAGATAACAGACAACCAAATTCAAGACGGTTTAAGAAGGAAAAGCAATGTGATAAGGGTGCCTCCCCTGTTCTGGAGGATTATTTATCAGGAATCAAGGCTCAGAACCGCTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACTTATACCCCATCCTTGGATTCTAAGATTAAGAGCCGATCCAAGATTAAACCACAGTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAATATTTATAGAAGTGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAAATATCCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCAAATACCGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTAGCAACTTCATTGCATGGCAAAGGAGGAGATTCACTTGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGGATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGACTATGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAGAACCTTCTCTTATGGGCAAAGCCTCTGATGGAATCAGGGAACATTGTTGATCTTGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAACAACTGTACAGGGTAGTGCTGGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGTGAGGTGCTGGAGCTGTTAACCAGTGGAGAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACCTATCTTTGGAGGATTATTTGTGA 1596 0.4091 MKIIKRTNQIHAFFLLFLRNGSSKGIARYCFEHAHEGCTMVSVGRRGKADQSVEQNSTHCQGNSILRYNLTKYKLQWMTSLLNMVTCIFSLVDNRQPNSRRFKKEKQCDKGASPVLEDYLSGIKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKSRSKIKPQFSFRFIVSFLASPFRRKNFNIYRSEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATSLHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIVDLADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGEDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDYL 531
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00680 531 PANTHER OS08G0249100 PROTEIN 68 501 IPR046958 -
Vian1g00680 531 ProSitePatterns Protein kinases ATP-binding region signature. 227 249 IPR017441 GO:0005524
Vian1g00680 531 MobiDBLite consensus disorder prediction 133 154 - -
Vian1g00680 531 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 298 502 - -
Vian1g00680 531 SUPERFAMILY Protein kinase-like (PK-like) 195 488 IPR011009 -
Vian1g00680 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Vian1g00680 531 Pfam Protein kinase domain 221 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00680 531 Gene3D Phosphorylase Kinase; domain 1 185 297 - -
Vian1g00680 531 ProSiteProfiles Protein kinase domain profile. 221 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00680 531 FunFam Putative receptor-like serine/threonine-protein kinase 188 297 - -
Vian1g00680 531 Gene3D Transferase(Phosphotransferase) domain 1 299 501 - -
Vian1g00680 531 SMART serkin_6 221 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian1g00680 Vian-Chr1 6800107 6802311 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00680 209 527 Trihelix Transcription Factor Family AT1G70460 40.356 1.67e-74 248
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian1g00680 PK_Tyr_Ser-Thr 3.9e-40 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00680 - - gmx:100782832 875.93