Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00679 ATGGGAATTGAAAAAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCGTGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGTCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGCGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCACCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGTGACTCTGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCCGTTGAGCCTTTCTTCGACTCTGCCGAATCCATCGTCAAGGCCTCCGCCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGCTGCTTCCGATGCCTTCGCACCCGACGACCCCGACGCTGCCGCCTGGCTCATCCCTAACCCCAATTTCGGGTCGAAATTCATGGACGCCCCTGACATCAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGACTTCGATTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGTGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTTCCCTCGTCAATAACCACCAACAATCAGAAAGCTGTTTCGACATCGATTTTTGCCGCACCAAACTTTCCTCCTTTAATTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCGTCGTCATCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACCGTGTCGGAGATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCAGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGACCCAGGATAAAAGGGCGGTTCGCGAAGCGAGCAGAAATTGACTCTGATGTGGAGCGTCTCTACAGTCCAGGCGCTGCGTCGCTGATGCTGGACAGTCCATACGGCGTGGTACCGTCGTTTTAG 1119 0.5746 MGIEKGGLKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFDSAESIVKASAAASFGFIVPSDDATAASDAFAPDDPDAAAWLIPNPNFGSKFMDAPDIKSKEIFYSEMDPFLDFDYSNSFHNNNSGNDSVVPVQTKPSLAPSLVNNHQQSESCFDIDFCRTKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAEIDSDVERLYSPGAASLMLDSPYGVVPSF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00679 372 CDD Bbox1_BBX-like 65 107 - -
Vian1g00679 372 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Vian1g00679 372 Pfam CCT motif 300 342 IPR010402 GO:0005515
Vian1g00679 372 CDD Bbox1_BBX-like 21 64 - -
Vian1g00679 372 SMART bboxneu5 65 107 IPR000315 GO:0008270
Vian1g00679 372 SMART bboxneu5 17 64 IPR000315 GO:0008270
Vian1g00679 372 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Vian1g00679 372 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Vian1g00679 372 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Vian1g00679 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 357 IPR045281 GO:0009909
Vian1g00679 372 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00679 Vian-Chr1 6779777 6780987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00679 1 372 C2C2-CO-like Transcription Factor Family AT5G57660 53.766 1.15e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian1g00679 zf-B_box 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00679 - - gmx:100805693 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00679 1 6779777 6780987 Vian1g00679 1 6779777 6780987 ECH